myRT

myRT report for GCA_000764615.1_ASM76461v1

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Seq: CP008929.1 Klebsiella pneumoniae strain PMK1, complete genome (5317001 bp)
Overview 1 RT 1: 947371-955989 bp 2 RT 2: 3842847-3848264 bp Neighborhood of RT #1 [947371, 956006] YqgA PRK09692 RVT-UG4 FimD FimC Neighborhood of RT #2 [3842847, 3848266] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Feature: gene Location: 947371-948084 bp Ori: AIT00369.1 Gene: ydfK_2 Feature: domain Description: YqgA Location: 947377-948079 bp Feature: domain Description: YqgA Location: 947377-948079 bp Feature: gene Location: 948902-949765 bp Ori: AIT00370.1 Gene: intA_2 Feature: domain Description: PRK09692 Location: 948926-949763 bp Feature: domain Description: PRK09692 Location: 948926-949763 bp Feature: gene Location: 950523-952604 bp Ori: AIT00371.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 950934-951378 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 950934-951 378 bp Feature: gene Location: 952601-955195 bp Ori: AIT00372.1 Gene: fimD_4 Feature: domain Description: FimD Location: 952643-955184 bp Feature: domain Description: FimD Location: 952643-9551 84 bp Feature: gene Location: 955242-956006 bp Ori: AIT00373.1 Gene: fimC_3 Feature: domain Description: FimC Location: 955287-955989 bp Feature: domain Description: FimC Location: 955287-955989 bp Feature: gene Location: 3842847-3843986 bp Ori: AIT03000.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3843030-3843930 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 3843030-3843930 bp Feature: gene Location: 3844157-3844399 bp Ori: AIT03001.1 Gene: dinI_2 Feature: domain Description: DinI Location: 3844208-3844388 bp Feature: domain Description: DinI Location: 3844208-3844388 bp Feature: gene Location: 3845016-3846500 bp Ori: AIT03002.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3845418-3846108 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 384541 8-38461 08 bp Feature: gene Location: 3846579-3846998 bp Ori: AIT03003.1 Gene: lexA_2 Feature: domain Description: PRK10276 Location: 3846582-3846993 bp Feature: domain Description: PRK1 0276 Location: 3846582-3846993 bp Feature: gene Location: 3847001-3848266 bp Ori: AIT03004.1 Gene: dinB_2 Feature: domain Description: umuC Location: 3847004-3848264 bp Feature: domain Description: umuC Location: 3847004-3848264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YqgA (COG1811), PRK09692 (Integrase; provisional), RVT-UG4, FimD (COG3188), FimC (COG3121), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP008933.1 Klebsiella pneumoniae strain PMK1 plasmid pPMK1-NDM, complete sequence (304526 bp)
Overview 1 RT 1: 6666-12922 bp 2 RT 2: 177775-182787 bp Neighborhood of RT #1 [6666, 12922] umuC PRK10276 RVT-GII cas7_csf2 Neighborhood of RT #2 [177775, 182787] INT_Cre_C RVT-GII HHA Feature: gene Location: 6666-7937 bp Ori: AIT04783.1 Gene: dinB Feature: domain Description: umuC Location: 6669-7929 bp Feature: domain Description: umuC Location: 6669-792 9 bp Feature: gene Location: 7937-8359 bp Ori: AIT04784.1 Gene: lexA Feature: domain Description: PRK10276 Location: 7943-8345 bp Feature: domain Description: PRK102 76 Location: 7943-8345 bp Feature: gene Location: 8445-9932 bp Ori: AIT04785.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8850-9540 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8850-9540 bp Feature: gene Location: 11209-12240 bp Ori: AIT04786.1 Feature: domain Description: cas7_csf2 Location: 11257-12175 bp Feature: domain Description: cas7_csf2 Location: 112 57-12 175 bp Feature: gene Location: 12245-12922 bp Feature: gene Location: 177775-178092 bp Feature: gene Location: 178158-179294 bp Ori: AIT04982.1 Feature: domain Description: INT_Cre_C Location: 178581-179235 bp Feature: domain Description: INT_Cre_C Location: 178581-1792 35 bp Feature: gene Location: 179380-180867 bp Ori: AIT04983.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179785-180475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 179785-180475 bp Feature: gene Location: 181380-181634 bp Ori: AIT04984.1 Gene: hha Feature: domain Description: HHA Location: 181431-181614 bp Feature: domain Description: HHA Location: 181431-181614 bp Feature: gene Location: 181720-182787 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT umuC (PRK03609), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, cas7_csf2 (TIGR03115), INT_Cre_C (cd00799), HHA (pfam05321)

Seq: CP008930.1 Klebsiella pneumoniae strain PMK1 plasmid pPMK1-A, complete sequence (187571 bp)
Overview 1 RT 1: 143392-147115 bp Neighborhood of RT #1 [143392, 147117] PRK10276 RVT-GII Antirestrict Feature: gene Location: 143392-143817 bp Ori: AIT04511.1 Gene: lexA Feature: domain Description: PRK10276 Location: 143395-143803 bp Feature: domain Description: PRK10276 Location: 143 3 95-143 803 bp Feature: gene Location: 144011-144223 bp Feature: gene Location: 144220-145707 bp Ori: AIT04513.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144625-145315 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 144625-1453 15 bp Feature: gene Location: 145653-146171 bp Feature: gene Location: 146692-147117 bp Ori: AIT04515.1 Gene: klcA Feature: domain Description: Antirestrict Location: 146827-147115 bp Feature: domain Description: Antirestrict Location: 146827-147115 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), RVT-GII, Antirestrict (pfam03230)