myRT

myRT report for GCA_000765415.1_ASM76541v1

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Seq: CP007634.1 Vibrio cholerae strain 2012EL-2176 chromosome 1, complete sequence (3043139 bp)
Overview 1 RT 1: 2018158-2023297 bp Neighborhood of RT #1 [2018158, 2023419] LysR PRK10621 RVT-Retrons COG3950 TIGR02646 Feature: gene Location: 2018158-2019018 bp Ori: AIT30322.1 Feature: domain Description: LysR Location: 2018164-2018992 bp Feature: domain Description: LysR Location: 201 81 64-201 8992 bp Feature: gene Location: 2018948-2019733 bp Ori: AIT30323.1 Feature: domain Description: PRK10621 Location: 2018957-2019728 bp Feature: domain Description: PRK1 0621 Location: 201 8957-201 9728 bp Feature: gene Location: 2020219-2021166 bp Ori: AIT30324.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2020333-2020930 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2020333-2020930 bp Feature: gene Location: 2021167-2022789 bp Ori: AIT30325.1 Feature: domain Description: COG3950 Location: 2021353-2022784 bp Feature: domain Description: COG3950 Location: 2021 353-2022784 bp Feature: gene Location: 2022802-2023419 bp Ori: AIT30326.1 Feature: domain Description: TIGR02646 Location: 2022913-2023297 bp Feature: domain Description: TIGR02646 Location: 202291 3-2023297 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LysR (COG0583), PRK10621 (hypothetical protein; Provisional), RVT-Retrons, COG3950 (Predicted ATP-binding protein involved in virulence ), TIGR02646 (TIGR02646 family protein)

Seq: CP007636.1 Vibrio cholerae strain 2012EL-2176 plasmid, complete sequence (167267 bp)
Overview 1 RT 1: 133967-138708 bp Neighborhood of RT #1 [133967, 138710] DHFR PRK13746 RVT-GII GIIM Multi_Drug_Res PRK13753 Feature: gene Location: 133967-134440 bp Ori: AIT32311.1 Feature: domain Description: DHFR Location: 133976-134432 bp Feature: domain Description: DHFR Location: 133976-134432 bp Feature: gene Location: 134621-135448 bp Ori: AIT32312.1 Feature: domain Description: PRK13746 Location: 134624-135398 bp Feature: domain Description: PRK13746 Location: 13462 4-135398 bp Feature: gene Location: 135508-136857 bp Ori: AIT32313.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135790-136408 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 135790-136408 bp Feature: domain Description: GIIM Note: maturase Location: 136456-136660 bp Feature: domain Description: GIIM Note: maturase Location: 136456-136660 bp Feature: gene Location: 137530-137877 bp Ori: AIT32314.1 Feature: domain Description: Multi_Drug_Res Location: 137539-137812 bp Feature: domain Description: Multi_Drug_Res Location: 137539-137812 bp Feature: gene Location: 137871-138710 bp Ori: AIT32315.1 Feature: domain Description: PRK13753 Location: 137874-138708 bp Feature: domain Description: PRK13753 Location: 137874-138708 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DHFR (cl17279), PRK13746 (aminoglycoside resistance protein; Provisional), RVT-GII, GIIM (pfam08388), Multi_Drug_Res (pfam00893), PRK13753 (dihydropteroate synthase; Provisional)