myRT

myRT report for GCA_000770565.1_ASM77056v1

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Seq: CP009157.1 Burkholderia pseudomallei strain TSV202 chromosome 1, complete sequence (4228716 bp)
Overview 1 RT 1: 2508830-2514547 bp Neighborhood of RT #1 [2508830, 2514579] COG4928 RVT-Retrons HipB HipB Feature: gene Location: 2508830-2509717 bp Feature: gene Location: 2509717-2511429 bp Ori: AIV79699.1 Feature: domain Description: COG4928 Location: 2509771-2511418 bp Feature: domain Description: COG4928 Location: 2509771 -251 1 41 8 bp Feature: gene Location: 2511723-2512709 bp Ori: AIV78341.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2511930-2512461 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 251 1 930-251 2461 bp Feature: gene Location: 2512690-2512995 bp Ori: AIV77743.1 Feature: domain Description: HipB Location: 2512699-2512927 bp Feature: domain Description: HipB Location: 251 2699-251 2927 bp Feature: gene Location: 2514289-2514579 bp Ori: AIV78965.1 Feature: domain Description: HipB Location: 2514307-2514547 bp Feature: domain Description: HipB Location: 251 4307-251 4547 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4928 (Predicted P-loop ATPase, KAP-like ), RVT-Retrons, HipB (COG1396)

Seq: CP009156.1 Burkholderia pseudomallei strain TSV202 chromosome 2, complete sequence (3267160 bp)
Overview 1 RT 1: 1578862-1583246 bp Neighborhood of RT #1 [1578862, 1583299] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C PRiA4_ORF3 Feature: gene Location: 1578862-1579209 bp Ori: AIV75583.1 Feature: domain Description: TnpB_IS66 Location: 1578889-1579177 bp Feature: domain Description: TnpB_IS66 Location: 1578889-1579177 bp Feature: gene Location: 1579239-1579868 bp Ori: AIV74430.1 Feature: domain Description: COG3436 Location: 1579536-1579845 bp Feature: domain Description: COG3436 Location: 1579536-1579845 bp Feature: gene Location: 1580386-1581648 bp Ori: AIV75888.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1580590-1581247 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1580590-15812 47 bp Feature: domain Description: GIIM Note: maturase Location: 1581325-1581541 bp Feature: domain Description: GIIM Note: maturase Location: 158132 5-1581541 bp Feature: gene Location: 1581706-1582662 bp Ori: AIV76254.1 Feature: domain Description: DDE_Tnp_IS66 Location: 1581709-1582507 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1581709-1582 507 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1582528-1582639 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1582 52 8-1582 639 bp Feature: gene Location: 1582703-1583299 bp Ori: AIV75394.1 Feature: domain Description: PRiA4_ORF3 Location: 1582727-1583246 bp Feature: domain Description: PRiA4_ORF3 Location: 1582 72 7-15832 46 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), COG3436 (Transposase ), RVT-GII, GIIM (pfam08388), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRiA4_ORF3 (pfam07929)

Seq: CP009155.1 Burkholderia pseudomallei strain TSV202 plasmid 1, complete sequence (271168 bp)
Overview 1 RT 1: 167723-171320 bp 2 RT 2: 196455-200822 bp Neighborhood of RT #1 [167723, 171355] PHA02517 RVT-GII GIIM HTH_21 InsE Neighborhood of RT #2 [196455, 200875] TnpB_IS66 COG3436 RVT-GII GIIM DDE_Tnp_IS66 DDE_Tnp_IS66_C PRiA4_ORF3 Feature: gene Location: 167723-167905 bp Feature: gene Location: 167933-168388 bp Ori: AIV73927.1 Feature: domain Description: PHA02517 Location: 167942-168374 bp Feature: domain Description: PHA02517 Location: 167942-1683 74 bp Feature: gene Location: 168484-170016 bp Ori: AIV73749.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168757-169495 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 168757-169495 bp Feature: domain Description: GIIM Note: maturase Location: 169606-169777 bp Feature: domain Description: GIIM Note: maturase Location: 169606-169777 bp Feature: gene Location: 170643-171050 bp Ori: AIV73724.1 Feature: domain Description: HTH_21 Location: 170745-170895 bp Feature: domain Description: HTH_21 Location: 170745-170895 bp Feature: gene Location: 171047-171355 bp Ori: AIV73668.1 Feature: domain Description: InsE Location: 171050-171320 bp Feature: domain Description: InsE Location: 171050-1713 20 bp Feature: gene Location: 196455-196745 bp Ori: AIV73778.1 Feature: domain Description: TnpB_IS66 Location: 196458-196716 bp Feature: domain Description: TnpB_IS66 Location: 196458-196716 bp Feature: gene Location: 196809-197444 bp Ori: AIV73672.1 Feature: domain Description: COG3436 Location: 197118-197421 bp Feature: domain Description: COG3 43 6 Location: 197118-197421 bp Feature: gene Location: 197962-199224 bp Ori: AIV73695.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198166-198823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 198166-198823 bp Feature: domain Description: GIIM Note: maturase Location: 198901-199117 bp Feature: domain Description: GIIM Note: maturase Location: 198901-199117 bp Feature: gene Location: 199282-200238 bp Ori: AIV73793.1 Feature: domain Description: DDE_Tnp_IS66 Location: 199285-200083 bp Feature: domain Description: DDE_Tnp_IS66 Location: 199285-200083 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 200104-200215 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 200104-200215 bp Feature: gene Location: 200279-200875 bp Ori: AIV73704.1 Feature: domain Description: PRiA4_ORF3 Location: 200303-200822 bp Feature: domain Description: PRiA4_ORF3 Location: 2003 03 -200822 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), HTH_21 (pfam13276), InsE (COG2963), TnpB_IS66 (pfam05717), COG3436 (Transposase ), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), PRiA4_ORF3 (pfam07929)