myRT

myRT report for GCA_000783735.2_ASM78373v2

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Seq: CP026099.1 Shigella flexneri strain FDAARGOS_74 plasmid unnamed (229413 bp)
Overview 1 RT 1: 105301-107942 bp 2 RT 2: 202467-204696 bp 3 RT 3: 214886-218673 bp Neighborhood of RT #1 [105301, 107959] COG3547 DDE_Tnp_IS66_C RVT-GII DDE_Tnp_IS66 Neighborhood of RT #2 [202467, 205042] RVT-GII InsE Neighborhood of RT #3 [214886, 218693] OrfB_IS605 DDE_Tnp_IS66_C RVT-GII GIIM RVT-GII PAP2_acid_phosphatase Feature: gene Location: 105301-105783 bp Feature: domain Description: COG3547 Location: 105319-105772 bp Feature: domain Description: COG3547 Location: 1 0531 9-1 05772 bp Feature: gene Location: 105813-105992 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 105858-105969 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 05858-1 05969 bp Feature: gene Location: 106075-107203 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106171-106825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 061 71 -1 06825 bp Feature: gene Location: 107304-107723 bp Feature: gene Location: 107780-107959 bp Feature: domain Description: DDE_Tnp_IS66 Location: 107789-107942 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 07789-1 07942 bp Feature: gene Location: 202467-202889 bp Feature: gene Location: 203280-203458 bp Feature: gene Location: 203552-203791 bp Ori: AUU33816.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203558-203765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 203558-203765 bp Feature: gene Location: 203986-204352 bp Feature: gene Location: 204354-205042 bp Feature: domain Description: InsE Location: 204357-204696 bp Feature: domain Description: InsE Location: 204357-204696 bp Feature: gene Location: 214886-215056 bp Feature: domain Description: OrfB_IS605 Location: 214892-215054 bp Feature: domain Description: OrfB_IS605 Location: 21 4892-21 5054 bp Feature: gene Location: 215135-215248 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 215138-215228 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 21 51 38-21 5228 bp Feature: gene Location: 215382-215909 bp Ori: AUU33819.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 215388-215532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 5388-21 5532 bp Feature: domain Description: GIIM Note: maturase Location: 215616-215832 bp Feature: domain Description: GIIM Note: maturase Location: 21 561 6-21 5832 bp Feature: gene Location: 215993-217395 bp Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 216353-217010 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 6353-21 701 0 bp Feature: gene Location: 217585-217665 bp Feature: gene Location: 217944-218693 bp Ori: AUU33820.1 Feature: domain Description: PAP2_acid_phosphatase Location: 218019-218673 bp Feature: domain Description: PAP2_acid_phosphatase Location: 21 801 9-21 8673 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3547 (Transposase ), DDE_Tnp_IS66_C (pfam13817), RVT-GII, DDE_Tnp_IS66 (pfam03050), InsE (COG2963), OrfB_IS605 (pfam01385), GIIM (pfam08388), PAP2_acid_phosphatase (cd03397)