myRT

myRT report for GCA_000784965.1_ASM78496v1

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Seq: CP009868.1 Pantoea sp. PSNIH2 plasmid pPSP-100, complete sequence (165878 bp)
Overview 1 RT 1: 25971-31417 bp Neighborhood of RT #1 [25971, 31935] VirB4 RVT-GII GIIM HTH_43 SPO0J_N KorB Feature: gene Location: 25971-26645 bp Ori: AIX76090.1 Feature: domain Description: VirB4 Location: 26046-26283 bp Feature: domain Description: VirB4 Location: 26046-26283 bp Feature: gene Location: 26894-27271 bp Feature: gene Location: 28532-29920 bp Ori: AIX76092.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28862-29480 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28862-29480 bp Feature: domain Description: GIIM Note: maturase Location: 29528-29744 bp Feature: domain Description: GIIM Note: maturase Location: 29528-29744 bp Feature: gene Location: 30433-30705 bp Ori: AIX76093.1 Feature: domain Description: HTH_43 Location: 30448-30676 bp Feature: domain Description: HTH_43 Location: 30448-30676 bp Feature: gene Location: 30754-31935 bp Ori: AIX76094.1 Feature: domain Description: SPO0J_N Location: 30832-31114 bp Feature: domain Description: SPO0J_N Location: 30832-31 1 1 4 bp Feature: domain Description: KorB Location: 31159-31417 bp Feature: domain Description: KorB Location: 31 1 59-31 41 7 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT VirB4 (COG3451), RVT-GII, GIIM (pfam08388), HTH_43 (pfam09904), SPO0J_N (cd16393), KorB (pfam08535)

Seq: CP009869.1 Pantoea sp. PSNIH2 plasmid pPSP-75c, complete sequence (378808 bp)
Overview 1 RT 1: 104378-109839 bp Neighborhood of RT #1 [104378, 109841] PRK11352 PHA02517 RVT-GII GIIM quinone_pig3 DDE_Tnp_IS1 Feature: gene Location: 104378-104686 bp Ori: AIX76327.1 Feature: domain Description: PRK11352 Location: 104543-104684 bp Feature: domain Description: PRK11352 Location: 104543-104684 bp Feature: gene Location: 104902-105327 bp Ori: AIX76328.1 Feature: domain Description: PHA02517 Location: 104923-105262 bp Feature: domain Description: PHA02 517 Location: 10492 3-1052 62 bp Feature: gene Location: 105934-107442 bp Ori: AIX76578.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106192-106924 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 106192 -10692 4 bp Feature: domain Description: GIIM Note: maturase Location: 106999-107197 bp Feature: domain Description: GIIM Note: maturase Location: 106999-107197 bp Feature: gene Location: 108124-109125 bp Ori: AIX76329.1 Feature: domain Description: quinone_pig3 Location: 108148-109120 bp Feature: domain Description: quinone_pig3 Location: 108148-10912 0 bp Feature: gene Location: 109338-109841 bp Ori: AIX76330.1 Feature: domain Description: DDE_Tnp_IS1 Location: 109449-109839 bp Feature: domain Description: DDE_Tnp_IS1 Location: 109449-109839 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11352 (formaldehyde-responsive transcriptional repressor FrmR), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), quinone_pig3 (TIGR02824), DDE_Tnp_IS1 (pfam03400)