myRT

myRT report for GCA_000786425.1_Vibrio_anguillarum_NB10_serovar_O1

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Seq: LK021130.1 Vibrio anguillarum chromosome 1, strain NB10, complete sequence (3119695 bp)
Overview 1 RT 1: 1579748-1588521 bp Neighborhood of RT #1 [1579748, 1589186] Phage_GPA DDE_Tnp_1_5 RVT-Retrons Ser_Recombinase Recombinase Zn_ribbon_recom Feature: gene Location: 1579748-1581547 bp Ori: CDQ50254.1 Feature: domain Description: Phage_GPA Location: 1580354-1581005 bp Feature: domain Description: Phage_GPA Location: 1 580354-1 581 005 bp Feature: gene Location: 1582073-1582993 bp Ori: CDQ50255.1 Feature: domain Description: DDE_Tnp_1_5 Location: 1582130-1582460 bp Feature: domain Description: DDE_Tnp_1 _5 Location: 1 5821 30-1 582460 bp Feature: gene Location: 1584359-1585498 bp Ori: CDQ50256.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1584599-1585226 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 584599-1 585226 bp Feature: gene Location: 1585646-1586962 bp Feature: gene Location: 1587321-1589186 bp Ori: CDQ50258.1 Feature: domain Description: Ser_Recombinase Location: 1587360-1587801 bp Feature: domain Description: Ser_Recombinase Location: 1 587360-1 587801 bp Feature: domain Description: Recombinase Location: 1587954-1588224 bp Feature: domain Description: Recombinase Location: 1 587954-1 588224 bp Feature: domain Description: Zn_ribbon_recom Location: 1588347-1588521 bp Feature: domain Description: Zn_ribbon_recom Location: 1 588347-1 588521 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Phage_GPA (pfam05840), DDE_Tnp_1_5 (pfam13737), RVT-Retrons, Ser_Recombinase (cl02788), Recombinase (pfam07508), Zn_ribbon_recom (pfam13408)

Seq: LK021129.1 Vibrio anguillarum chromosome 2, strain NB10, complete sequence (1187342 bp)
Overview 1 RT 1: 290359-296683 bp 2 RT 2: 394682-401122 bp 3 RT 3: 686780-694226 bp 4 RT 4: 727779-737794 bp Neighborhood of RT #1 [290359, 296685] DnaA RVT_N RVT-GII GIIM CHD AGS_C Neighborhood of RT #2 [394682, 401142] LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-Retrons AAA_15 AAA_15 Hypoth_Ymh Neighborhood of RT #3 [686780, 694345] RhaT RVT_N RVT-GII GIIM UvrA UvrA UvrA Neighborhood of RT #4 [727779, 737794] DUF2235 RVT_N RVT-GII RVT-GII GIIM SMC_prok_B Feature: gene Location: 290359-292053 bp Ori: CDQ48128.1 Feature: domain Description: DnaA Location: 290497-290572 bp Feature: domain Description: DnaA Location: 2 90497-2 90572 bp Feature: gene Location: 292382-292555 bp Feature: gene Location: 292734-294206 bp Ori: CDQ48130.1 Feature: domain Description: RVT_N Location: 292782-293025 bp Feature: domain Description: RVT_N Location: 2 92 782 -2 9302 5 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 293070-293697 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 93070-2 93697 bp Feature: domain Description: GIIM Note: maturase Location: 293754-293982 bp Feature: domain Description: GIIM Note: maturase Location: 2 93754-2 93982 bp Feature: gene Location: 294679-295245 bp Feature: gene Location: 295276-296685 bp Ori: CDQ48132.1 Feature: domain Description: CHD Location: 295615-296092 bp Feature: domain Description: CHD Location: 2 95615-2 96092 bp Feature: domain Description: AGS_C Location: 296257-296683 bp Feature: domain Description: AGS_C Location: 2 962 57-2 96683 bp Feature: gene Location: 394682-396223 bp Ori: CDQ48218.1 Feature: domain Description: LZ_Tnp_IS66 Location: 394808-395015 bp Feature: domain Description: LZ_Tnp_IS66 Location: 394808-395015 bp Feature: domain Description: zf-IS66 Location: 395039-395171 bp Feature: domain Description: zf-IS66 Location: 395039-395171 bp Feature: domain Description: DDE_Tnp_IS66 Location: 395231-396080 bp Feature: domain Description: DDE_Tnp_IS66 Location: 3952 31-396080 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 396101-396209 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 396101-3962 09 bp Feature: gene Location: 396281-396415 bp Feature: gene Location: 396801-397901 bp Ori: CDQ48220.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 396945-397500 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 396945-397500 bp Feature: gene Location: 398077-400194 bp Ori: CDQ48221.1 Feature: domain Description: AAA_15 Location: 398080-398497 bp Feature: domain Description: AAA_15 Location: 398080-398497 bp Feature: domain Description: AAA_15 Location: 398632-399061 bp Feature: domain Description: AAA_15 Location: 398632 -399061 bp Feature: gene Location: 400342-401142 bp Ori: CDQ48222.1 Feature: domain Description: Hypoth_Ymh Location: 400762-401122 bp Feature: domain Description: Hypoth_Ymh Location: 400762 -40112 2 bp Feature: gene Location: 686780-687661 bp Ori: CDQ48511.1 Feature: domain Description: RhaT Location: 686786-687632 bp Feature: domain Description: RhaT Location: 686786-687632 bp Feature: gene Location: 688003-688431 bp Feature: gene Location: 688480-689952 bp Ori: CDQ48513.1 Feature: domain Description: RVT_N Location: 688528-688771 bp Feature: domain Description: RVT_N Location: 68852 8-688771 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688816-689443 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 688816-689443 bp Feature: domain Description: GIIM Note: maturase Location: 689500-689728 bp Feature: domain Description: GIIM Note: maturase Location: 689500-68972 8 bp Feature: gene Location: 690131-690304 bp Feature: gene Location: 690641-694345 bp Ori: CDQ48515.1 Feature: domain Description: UvrA Location: 690647-691709 bp Feature: domain Description: UvrA Location: 690647-691709 bp Feature: domain Description: UvrA Location: 691721-693200 bp Feature: domain Description: UvrA Location: 69172 1-6932 00 bp Feature: domain Description: UvrA Location: 693683-694226 bp Feature: domain Description: UvrA Location: 693683-6942 2 6 bp Feature: gene Location: 727779-728396 bp Feature: gene Location: 728389-731100 bp Ori: CDQ48544.1 Feature: domain Description: DUF2235 Location: 729667-730498 bp Feature: domain Description: DUF2 2 35 Location: 72 9667-730498 bp Feature: gene Location: 731968-732798 bp Feature: domain Description: RVT_N Location: 732016-732256 bp Feature: domain Description: RVT_N Location: 732 016-732 2 56 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732304-732796 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732 304-732 796 bp Feature: gene Location: 732798-733436 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732816-732930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 732 816-732 930 bp Feature: domain Description: GIIM Note: maturase Location: 732987-733215 bp Feature: domain Description: GIIM Note: maturase Location: 732 987-7332 15 bp Feature: gene Location: 734369-735862 bp Ori: CDQ48546.1 Feature: domain Description: SMC_prok_B Location: 734939-735698 bp Feature: domain Description: SMC_prok_B Location: 734939-735698 bp Feature: gene Location: 736676-737794 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DnaA (TIGR00362), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), CHD (cd07302), AGS_C (pfam18134), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817)
RVT-Retrons, AAA_15 (pfam13175), Hypoth_Ymh (pfam09509), RhaT (TIGR00776), UvrA (COG0178), DUF2235 (pfam09994), SMC_prok_B (TIGR02168)