myRT

myRT report for GCA_000786695.1_ASM78669v1

Download annotations/find similar RTs

Seq: CP009962.1 Collimonas arenae strain Cal35, complete genome (5603532 bp)
Overview 1 RT 1: 830205-833963 bp 2 RT 2: 1559566-1565953 bp 3 RT 3: 4744365-4749263 bp 4 RT 4: 5274748-5282590 bp Neighborhood of RT #1 [830205, 833963] LGT_LGT_LGT_TIGR03299 RVT-UG2 PRK09706 Neighborhood of RT #2 [1559566, 1565955] DUF4236 LprI RVT-Retrons Trypsin_2 3beta-17beta-HSD_like_SDR_c dnstrm_HI1420 Neighborhood of RT #3 [4744365, 4749263] RVT-Retrons TrmB Neighborhood of RT #4 [5274748, 5282790] TIGR03549 COG4637 RVT-Retrons HTH_XRE Feature: gene Location: 830205-831164 bp Ori: AIY39901.1 Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 830223-831150 bp Feature: domain Description: LGT_LGT_LGT_TIGR03299 Location: 830223-831 1 50 bp Feature: gene Location: 831295-831441 bp Feature: gene Location: 831537-832913 bp Ori: AIY39903.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 831837-832620 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 831 837-832620 bp Feature: gene Location: 833209-833646 bp Ori: AIY39904.1 Feature: domain Description: PRK09706 Location: 833338-833584 bp Feature: domain Description: PRK09706 Location: 833338-833584 bp Feature: gene Location: 833838-833963 bp Feature: gene Location: 1559566-1560276 bp Feature: gene Location: 1560349-1562106 bp Ori: AIY40561.1 Feature: domain Description: DUF4236 Location: 1560358-1560508 bp Feature: domain Description: DUF4236 Location: 1 560358-1 560508 bp Feature: domain Description: LprI Location: 1561816-1562044 bp Feature: domain Description: LprI Location: 1 561 81 6-1 562044 bp Feature: gene Location: 1562707-1564320 bp Ori: AIY40562.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1562860-1563454 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 562860-1 563454 bp Feature: domain Description: Trypsin_2 Location: 1563832-1564231 bp Feature: domain Description: Trypsin_2 Location: 1 563832-1 564231 bp Feature: gene Location: 1564879-1565661 bp Ori: AIY40563.1 Feature: domain Description: 3beta-17beta-HSD_like_SDR_c Location: 1564906-1565650 bp Feature: domain Description: 3beta-1 7beta-HSD_like_SDR_c Location: 1 564906-1 565650 bp Feature: gene Location: 1565803-1565955 bp Ori: AIY40564.1 Feature: domain Description: dnstrm_HI1420 Location: 1565815-1565953 bp Feature: domain Description: dnstrm_HI1 420 Location: 1 56581 5-1 565953 bp Feature: gene Location: 4744365-4744514 bp Feature: gene Location: 4744585-4744713 bp Feature: gene Location: 4745132-4746874 bp Ori: AIY43390.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4745267-4745900 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 4745267-4745900 bp Feature: gene Location: 4747977-4748684 bp Ori: AIY43391.1 Feature: domain Description: TrmB Location: 4748031-4748679 bp Feature: domain Description: TrmB Location: 4748031 -4748679 bp Feature: gene Location: 4748727-4749263 bp Feature: gene Location: 5274748-5276952 bp Ori: AIY43869.1 Feature: domain Description: TIGR03549 Location: 5274754-5276917 bp Feature: domain Description: TIGR03549 Location: 5274754-527691 7 bp Feature: gene Location: 5277773-5278864 bp Ori: AIY43870.1 Feature: domain Description: COG4637 Location: 5277785-5278817 bp Feature: domain Description: COG4637 Location: 5277785-527881 7 bp Feature: gene Location: 5279605-5280528 bp Ori: AIY43871.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5279707-5280298 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 5279707-5280298 bp Feature: gene Location: 5280525-5281472 bp Feature: gene Location: 5282407-5282790 bp Ori: AIY43873.1 Feature: domain Description: HTH_XRE Location: 5282422-5282590 bp Feature: domain Description: HTH_XRE Location: 5282422-5282590 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT LGT_LGT_LGT_TIGR03299, RVT-UG2, PRK09706 (transcriptional repressor DicA; Reviewed), DUF4236 (pfam14020), LprI (pfam07007), RVT-Retrons, Trypsin_2 (pfam13365), 3beta-17beta-HSD_like_SDR_c (cd05341), dnstrm_HI1420 (TIGR02684), TrmB (pfam01978)
TIGR03549 (YcaO domain protein), COG4637 (Predicted ATPase ), HTH_XRE (smart00530)