myRT

myRT report for GCA_000802245.2_ASM80224v2

Download annotations/find similar RTs

Seq: CP021080.1 Streptomyces pluripotens strain MUSC 135 chromosome, complete genome (7346075 bp)
Overview 1 RT 1: 169832-174431 bp 2 RT 2: 803331-809330 bp 3 RT 3: 1890670-1894606 bp 4 RT 4: 3272219-3278499 bp 5 RT 5: 3503847-3512991 bp 6 RT 6: 3984174-3989230 bp 7 RT 7: 4228015-4232140 bp 8 RT 8: 5068740-5072244 bp 9 RT 9: 5083317-5087654 bp 10 RT 10: 5118948-5124898 bp 11 RT 11: 7237670-7240067 bp 12 RT 12: 7313834-7320111 bp Neighborhood of RT #1 [169832, 175316] HipB Flavoprotein RVT-GII GIIM InsE Neighborhood of RT #2 [803331, 809386] InsE RVT-GII GIIM Imm21 DUF772 DDE_Tnp_1 DDE_Tnp_1_6 Neighborhood of RT #3 [1890670, 1895491] RVT-GII GIIM InsE Neighborhood of RT #4 [3272219, 3278537] DPBB_1 ChiA1_BD chitinase_GH19 RVT-GII GIIM COG3903 HTH_LUXR Neighborhood of RT #5 [3503847, 3513002] pfam13191 WD40 WD40 WD40 WD40 RVT-GII NERD MngR Neighborhood of RT #6 [3984174, 3990100] HTH_Tnp_1 DDE_Tnp_1 DDE_Tnp_1_6 RVT-GII GIIM InsE Neighborhood of RT #7 [4228015, 4232169] PHA02517 RVT-GII GIIM PRK09183 Neighborhood of RT #8 [5068740, 5073129] DUF4291 RVT-GII GIIM InsE Neighborhood of RT #9 [5083317, 5088777] InsE RVT-GII GIIM HTH_Tnp_1 Neighborhood of RT #10 [5118948, 5124898] InsE RVT-GII GIIM ABC_TM1139_LivF_branched ABC_TM1139_LivF_branched Neighborhood of RT #11 [7237670, 7240336] COG3293 COG3293 RVT-GII HTH_MerR-trunc Neighborhood of RT #12 [7313834, 7320167] InsE DDE_Tnp_1_assoc DDE_Tnp_1 RVT-GII GIIM zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 Feature: gene Location: 169832-171016 bp Ori: ARP68707.1 Feature: domain Description: HipB Location: 169859-170117 bp Feature: domain Description: HipB Location: 1 69859-1 701 1 7 bp Feature: gene Location: 171107-171682 bp Ori: ARP68708.1 Feature: domain Description: Flavoprotein Location: 171161-171587 bp Feature: domain Description: Flavoprotein Location: 1 71 1 61 -1 71 587 bp Feature: gene Location: 172115-173551 bp Ori: ARP68709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 172436-173123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 72436-1 731 23 bp Feature: domain Description: GIIM Note: maturase Location: 173198-173426 bp Feature: domain Description: GIIM Note: maturase Location: 1 731 98-1 73426 bp Feature: gene Location: 173590-173833 bp Feature: gene Location: 174119-175316 bp Feature: domain Description: InsE Location: 174134-174431 bp Feature: domain Description: InsE Location: 1 741 34-1 74431 bp Feature: gene Location: 803331-804528 bp Feature: domain Description: InsE Location: 803346-803643 bp Feature: domain Description: InsE Location: 803346-803643 bp Feature: gene Location: 804814-805057 bp Feature: gene Location: 805096-806532 bp Ori: ARP69149.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 805417-806104 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 80541 7-8061 04 bp Feature: domain Description: GIIM Note: maturase Location: 806179-806407 bp Feature: domain Description: GIIM Note: maturase Location: 8061 79-806407 bp Feature: gene Location: 806945-807472 bp Ori: ARP69150.1 Feature: domain Description: Imm21 Location: 806948-807416 bp Feature: domain Description: Imm21 Location: 806948-80741 6 bp Feature: gene Location: 807800-809386 bp Ori: ARP69151.1 Feature: domain Description: DUF772 Location: 807959-808181 bp Feature: domain Description: DUF772 Location: 807959-8081 81 bp Feature: domain Description: DDE_Tnp_1 Location: 808616-808901 bp Feature: domain Description: DDE_Tnp_1 Location: 80861 6-808901 bp Feature: domain Description: DDE_Tnp_1_6 Location: 808979-809330 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 808979-809330 bp Feature: gene Location: 1890670-1890924 bp Feature: gene Location: 1891257-1891808 bp Feature: gene Location: 1892290-1893726 bp Ori: ARP69974.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1892611-1893298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 89261 1 -1 893298 bp Feature: domain Description: GIIM Note: maturase Location: 1893373-1893601 bp Feature: domain Description: GIIM Note: maturase Location: 1 893373-1 893601 bp Feature: gene Location: 1893765-1894008 bp Feature: gene Location: 1894294-1895491 bp Feature: domain Description: InsE Location: 1894309-1894606 bp Feature: domain Description: InsE Location: 1 894309-1 894606 bp Feature: gene Location: 3272219-3272590 bp Ori: ARP74184.1 Feature: domain Description: DPBB_1 Location: 3272285-3272573 bp Feature: domain Description: DPBB_1 Location: 3272285-3272573 bp Feature: gene Location: 3272669-3273610 bp Ori: ARP70987.1 Feature: domain Description: ChiA1_BD Location: 3272810-3272930 bp Feature: domain Description: ChiA1 _BD Location: 327281 0-3272930 bp Feature: domain Description: chitinase_GH19 Location: 3273005-3273608 bp Feature: domain Description: chitinase_GH1 9 Location: 3273005-3273608 bp Feature: gene Location: 3273998-3275434 bp Ori: ARP70988.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3274319-3275006 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 327431 9-3275006 bp Feature: domain Description: GIIM Note: maturase Location: 3275081-3275309 bp Feature: domain Description: GIIM Note: maturase Location: 3275081 -3275309 bp Feature: gene Location: 3275473-3275716 bp Feature: gene Location: 3276126-3278537 bp Ori: ARP70989.1 Feature: domain Description: COG3903 Location: 3276333-3277560 bp Feature: domain Description: COG3903 Location: 3276333-3277560 bp Feature: domain Description: HTH_LUXR Location: 3278331-3278499 bp Feature: domain Description: HTH_LUXR Location: 3278331 -3278499 bp Feature: gene Location: 3503847-3504308 bp Feature: gene Location: 3504818-3509068 bp Ori: ARP71168.1 Feature: domain Description: pfam13191 Location: 3505280-3505922 bp Feature: domain Description: pfam1 31 91 Location: 3505280-3505922 bp Feature: domain Description: WD40 Location: 3507047-3507752 bp Feature: domain Description: WD40 Location: 3507047-3507752 bp Feature: domain Description: WD40 Location: 3507785-3507881 bp Feature: domain Description: WD40 Location: 3507785-3507881 bp Feature: domain Description: WD40 Location: 3507935-3508019 bp Feature: domain Description: WD40 Location: 3507935-350801 9 bp Feature: domain Description: WD40 Location: 3508055-3508973 bp Feature: domain Description: WD40 Location: 3508055-3508973 bp Feature: gene Location: 3509439-3510118 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3509544-3509667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3509544-3509667 bp Feature: gene Location: 3511635-3512243 bp Ori: ARP74203.1 Feature: domain Description: NERD Location: 3511770-3512073 bp Feature: domain Description: NERD Location: 351 1 770-351 2073 bp Feature: gene Location: 3512244-3513002 bp Ori: ARP71169.1 Feature: domain Description: MngR Location: 3512262-3512991 bp Feature: domain Description: MngR Location: 351 2262-351 2991 bp Feature: gene Location: 3984174-3985582 bp Feature: domain Description: HTH_Tnp_1 Location: 3984222-3984459 bp Feature: domain Description: HTH_Tnp_1 Location: 3984222-3984459 bp Feature: gene Location: 3985619-3986635 bp Feature: domain Description: DDE_Tnp_1 Location: 3985865-3986150 bp Feature: domain Description: DDE_Tnp_1 Location: 3985865-39861 50 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3986228-3986579 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 3986228-3986579 bp Feature: gene Location: 3986899-3988335 bp Ori: ARP71527.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3987220-3987907 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3987220-3987907 bp Feature: domain Description: GIIM Note: maturase Location: 3987982-3988210 bp Feature: domain Description: GIIM Note: maturase Location: 3987982-398821 0 bp Feature: gene Location: 3988374-3988617 bp Feature: gene Location: 3988903-3990100 bp Feature: domain Description: InsE Location: 3988918-3989230 bp Feature: domain Description: InsE Location: 398891 8-3989230 bp Feature: gene Location: 4228015-4228814 bp Feature: domain Description: PHA02517 Location: 4228021-4228732 bp Feature: domain Description: PHA0251 7 Location: 4228021 -4228732 bp Feature: gene Location: 4229034-4229277 bp Feature: gene Location: 4229316-4230752 bp Ori: ARP71709.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4229637-4230324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4229637-4230324 bp Feature: domain Description: GIIM Note: maturase Location: 4230399-4230627 bp Feature: domain Description: GIIM Note: maturase Location: 4230399-4230627 bp Feature: gene Location: 4231121-4231384 bp Feature: gene Location: 4231381-4232169 bp Ori: ARP71711.1 Feature: domain Description: PRK09183 Location: 4231432-4232140 bp Feature: domain Description: PRK091 83 Location: 4231 432-42321 40 bp Feature: gene Location: 5068740-5069119 bp Feature: gene Location: 5069222-5069698 bp Ori: ARP72318.1 Feature: domain Description: DUF4291 Location: 5069252-5069660 bp Feature: domain Description: DUF4291 Location: 5069252-5069660 bp Feature: gene Location: 5069928-5071364 bp Ori: ARP72319.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5070249-5070936 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5070249-5070936 bp Feature: domain Description: GIIM Note: maturase Location: 5071011-5071239 bp Feature: domain Description: GIIM Note: maturase Location: 5071 01 1 -5071 239 bp Feature: gene Location: 5071403-5071646 bp Feature: gene Location: 5071932-5073129 bp Feature: domain Description: InsE Location: 5071947-5072244 bp Feature: domain Description: InsE Location: 5071 947-5072244 bp Feature: gene Location: 5083317-5084464 bp Feature: domain Description: InsE Location: 5083332-5083629 bp Feature: domain Description: InsE Location: 5083332-5083629 bp Feature: gene Location: 5084800-5085043 bp Feature: gene Location: 5085082-5086518 bp Ori: ARP72329.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5085403-5086090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5085403-5086090 bp Feature: domain Description: GIIM Note: maturase Location: 5086165-5086393 bp Feature: domain Description: GIIM Note: maturase Location: 50861 65-5086393 bp Feature: gene Location: 5086733-5087176 bp Feature: gene Location: 5087369-5088777 bp Feature: domain Description: HTH_Tnp_1 Location: 5087417-5087654 bp Feature: domain Description: HTH_Tnp_1 Location: 508741 7-5087654 bp Feature: gene Location: 5118948-5120095 bp Feature: domain Description: InsE Location: 5118963-5119260 bp Feature: domain Description: InsE Location: 51 1 8963-51 1 9260 bp Feature: gene Location: 5120431-5120674 bp Feature: gene Location: 5120713-5122149 bp Ori: ARP72349.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5121034-5121721 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 21 034-51 21 721 bp Feature: domain Description: GIIM Note: maturase Location: 5121796-5122024 bp Feature: domain Description: GIIM Note: maturase Location: 51 21 796-51 22024 bp Feature: gene Location: 5122402-5124222 bp Ori: ARP72350.1 Feature: domain Description: ABC_TM1139_LivF_branched Location: 5123269-5123371 bp Feature: domain Description: ABC_TM1 1 39_LivF_branched Location: 51 23269-51 23371 bp Feature: domain Description: ABC_TM1139_LivF_branched Location: 5123998-5124121 bp Feature: domain Description: ABC_TM1 1 39_LivF_branched Location: 51 23998-51 241 21 bp Feature: gene Location: 5124248-5124898 bp Feature: gene Location: 7237670-7238461 bp Ori: ARP73785.1 Feature: domain Description: COG3293 Location: 7237676-7238003 bp Feature: domain Description: COG3293 Location: 7237676-7238003 bp Feature: domain Description: COG3293 Location: 7238051-7238432 bp Feature: domain Description: COG3293 Location: 7238051 -7238432 bp Feature: gene Location: 7238418-7238954 bp Feature: gene Location: 7239014-7239448 bp Ori: ARP73787.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7239068-7239206 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7239068-7239206 bp Feature: gene Location: 7239568-7239693 bp Feature: gene Location: 7239749-7240336 bp Feature: domain Description: HTH_MerR-trunc Location: 7239989-7240067 bp Feature: domain Description: HTH_MerR-trunc Location: 7239989-7240067 bp Feature: gene Location: 7313834-7315031 bp Feature: domain Description: InsE Location: 7313849-7314146 bp Feature: domain Description: InsE Location: 731 3849-731 41 46 bp Feature: gene Location: 7315713-7316783 bp Ori: ARP74607.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 7315719-7315968 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 731 571 9-731 5968 bp Feature: domain Description: DDE_Tnp_1 Location: 7316001-7316685 bp Feature: domain Description: DDE_Tnp_1 Location: 731 6001 -731 6685 bp Feature: gene Location: 7316947-7318383 bp Ori: ARP73838.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7317268-7317955 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 731 7268-731 7955 bp Feature: domain Description: GIIM Note: maturase Location: 7318030-7318258 bp Feature: domain Description: GIIM Note: maturase Location: 731 8030-731 8258 bp Feature: gene Location: 7318430-7318612 bp Feature: gene Location: 7318848-7320167 bp Ori: ARP73840.1 Feature: domain Description: zf-ISL3 Location: 7318965-7319094 bp Feature: domain Description: zf-ISL3 Location: 731 8965-731 9094 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 7319124-7319277 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 731 91 24-731 9277 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 7319397-7320111 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 731 9397-73201 1 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HipB (COG1396), Flavoprotein (pfam02441), RVT-GII, GIIM (pfam08388), InsE (COG2963), Imm21 (pfam15589), DUF772 (pfam05598), DDE_Tnp_1 (pfam01609), DDE_Tnp_1_6 (pfam13751), DPBB_1 (smart00837)
ChiA1_BD (cd12214), chitinase_GH19 (cd00325), COG3903 (Predicted ATPase ), HTH_LUXR (smart00421), pfam13191 (AAA_16;AAA ATPase domain), WD40 (smart00320), NERD (pfam08378), MngR (COG2188), HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed)
PRK09183 (transposase/IS protein; Provisional), DUF4291 (pfam14124), ABC_TM1139_LivF_branched (cd03224), COG3293 (Transposase ), HTH_MerR-trunc (cd04762), DDE_Tnp_1_assoc (pfam13808), zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610)