myRT

myRT report for GCA_000803645.1_ASM80364v1

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Seq: CP009122.1 Sphingopyxis fribergensis strain Kp5.2, complete genome (4993584 bp)
Overview 1 RT 1: 2059969-2068752 bp 2 RT 2: 3479800-3483119 bp Neighborhood of RT #1 [2059969, 2069318] COG3183 PinE RVT-GII DEXXQc_SF1 DEXXQc_SF1 KOG1803 MTES_1575 Neighborhood of RT #2 [3479800, 3483119] DUF2807 DUF2807 RVT-Retrons HTH_XRE Feature: gene Location: 2059969-2060853 bp Ori: AJA08853.1 Feature: domain Description: COG3183 Location: 2060515-2060821 bp Feature: domain Description: COG31 83 Location: 206051 5-2060821 bp Feature: gene Location: 2060982-2061560 bp Ori: AJA08854.1 Feature: domain Description: PinE Location: 2060997-2061552 bp Feature: domain Description: PinE Location: 2060997-2061 552 bp Feature: gene Location: 2061538-2062857 bp Ori: AJA08855.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061934-2062456 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2061 934-2062456 bp Feature: gene Location: 2063185-2063502 bp Feature: gene Location: 2064249-2069318 bp Ori: AJA08857.1 Feature: domain Description: DEXXQc_SF1 Location: 2065509-2065860 bp Feature: domain Description: DEXXQc_SF1 Location: 2065509-2065860 bp Feature: domain Description: DEXXQc_SF1 Location: 2066877-2067867 bp Feature: domain Description: DEXXQc_SF1 Location: 2066877-2067867 bp Feature: domain Description: KOG1803 Location: 2068188-2068359 bp Feature: domain Description: KOG1 803 Location: 20681 88-2068359 bp Feature: domain Description: MTES_1575 Location: 2068476-2068752 bp Feature: domain Description: MTES_1 575 Location: 2068476-2068752 bp Feature: gene Location: 3479800-3480510 bp Ori: AJA10139.1 Feature: domain Description: DUF2807 Location: 3479899-3480454 bp Feature: domain Description: DUF2807 Location: 3479899-3480454 bp Feature: gene Location: 3480554-3481297 bp Ori: AJA10140.1 Feature: domain Description: DUF2807 Location: 3480695-3481247 bp Feature: domain Description: DUF2807 Location: 3480695-3481 247 bp Feature: gene Location: 3481667-3482593 bp Ori: AJA10141.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3481820-3482330 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3481 820-3482330 bp Feature: gene Location: 3482580-3482894 bp Ori: AJA10142.1 Feature: domain Description: HTH_XRE Location: 3482592-3482757 bp Feature: domain Description: HTH_XRE Location: 3482592-3482757 bp Feature: gene Location: 3482919-3483119 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3183 (Predicted restriction endonuclease, HNH family ), PinE (COG1961), RVT-GII, DEXXQc_SF1 (cd18043), KOG1803 (KOG1803, DNA helicase ), MTES_1575 (pfam18741), DUF2807 (pfam10988), RVT-Retrons, HTH_XRE (smart00530)