myRT

myRT report for GCA_000803665.1_ASM80366v1

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Seq: CP010093.1 Bacillus thuringiensis serovar galleriae strain HD-29 plasmid pBMB71, complete sequence (71373 bp)
Overview 1 RT 1: 46491-51506 bp Neighborhood of RT #1 [46491, 51506] RVT-GII GIIM Feature: gene Location: 46491-46784 bp Feature: gene Location: 47297-47728 bp Feature: gene Location: 48306-49613 bp Ori: AJA23712.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48591-49227 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 48591 -49227 bp Feature: domain Description: GIIM Note: maturase Location: 49305-49530 bp Feature: domain Description: GIIM Note: maturase Location: 49305-49530 bp Feature: gene Location: 49787-49966 bp Feature: gene Location: 51288-51506 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388)

Seq: CP010098.1 Bacillus thuringiensis serovar galleriae strain HD-29 plasmid pBMB7, complete sequence (10656 bp)
Overview 1 RT 1: 1689-5276 bp Neighborhood of RT #1 [1689, 5284] RVT-GII GIIM Doc doc_partner Feature: gene Location: 1689-1943 bp Feature: gene Location: 2045-2629 bp Feature: gene Location: 3227-4501 bp Ori: AJA23902.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3428-4043 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 342 8-4043 bp Feature: domain Description: GIIM Note: maturase Location: 4103-4310 bp Feature: domain Description: GIIM Note: maturase Location: 4103-4310 bp Feature: gene Location: 4582-4983 bp Ori: AJA23903.1 Feature: domain Description: Doc Location: 4597-4969 bp Feature: domain Description: Doc Location: 4597-4969 bp Feature: gene Location: 5021-5284 bp Ori: AJA23908.1 Feature: domain Description: doc_partner Location: 5045-5276 bp Feature: domain Description: doc_partner Location: 5045-52 76 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), Doc (COG3654), doc_partner (TIGR02609)

Seq: CP010090.1 Bacillus thuringiensis serovar galleriae strain HD-29 plasmid pBMB426, complete sequence (426282 bp)
Overview 1 RT 1: 188120-195226 bp 2 RT 2: 290683-295108 bp 3 RT 3: 328053-331524 bp 4 RT 4: 353836-379347 bp 5 RT 5: 400484-410021 bp 6 RT 6: 416560-425984 bp Neighborhood of RT #1 [188120, 195384] COG4584 Replic_Relax RVT-GII Intron_maturas2 HNHc HTH_XRE Neighborhood of RT #2 [290683, 295108] RVT-GII Intron_maturas2 HNHc Neighborhood of RT #3 [328053, 331577] PRK06763 SASP RVT-GII Intron_maturas2 HNHc Neighborhood of RT #4 [353836, 379898] rpsA RVT-GII GIIM HNHc RVT-GII Intron_maturas2 HNHc RVT-GII HNHc RVT-GII Intron_maturas2 HNHc PRK09183 COG4584 Replic_Relax RVT-GII Intron_maturas2 HNHc CetZ_tubulin-like CetZ_tubulin-like Neighborhood of RT #5 [400484, 410062] LPD1 RVT-GII HNHc T_den_put_tspse MFS_LmrB_MDR_like Neighborhood of RT #6 [416560, 425984] TrbL CwlT_like RVT-GII HNHc Feature: gene Location: 188120-189415 bp Ori: AJA23109.1 Feature: domain Description: COG4584 Location: 188534-188924 bp Feature: domain Description: COG4584 Location: 18853 4-188924 bp Feature: gene Location: 189930-191207 bp Ori: AJA23110.1 Feature: domain Description: Replic_Relax Location: 190014-190560 bp Feature: domain Description: Replic_Relax Location: 190014-190560 bp Feature: gene Location: 191853-193730 bp Ori: AJA23303.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192120-192957 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 192120-192957 bp Feature: domain Description: Intron_maturas2 Location: 193095-193386 bp Feature: domain Description: Intron_maturas2 Location: 193 095-193 3 86 bp Feature: domain Description: HNHc Note: nucleases Location: 193518-193677 bp Feature: domain Description: HNHc Note: nucleases Location: 193 518-193 677 bp Feature: gene Location: 194532-194681 bp Feature: gene Location: 195040-195384 bp Ori: AJA23112.1 Feature: domain Description: HTH_XRE Location: 195055-195226 bp Feature: domain Description: HTH_XRE Location: 195055-195226 bp Feature: gene Location: 290683-292560 bp Ori: AJA23307.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290950-291787 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 290950-291787 bp Feature: domain Description: Intron_maturas2 Location: 291925-292216 bp Feature: domain Description: Intron_maturas2 Location: 291925-292216 bp Feature: domain Description: HNHc Note: nucleases Location: 292348-292507 bp Feature: domain Description: HNHc Note: nucleases Location: 2923 48-292507 bp Feature: gene Location: 293442-293759 bp Feature: gene Location: 294707-295108 bp Feature: gene Location: 328053-328469 bp Ori: AJA23234.1 Feature: domain Description: PRK06763 Location: 328056-328158 bp Feature: domain Description: PRK06763 Location: 3 28056-3 28158 bp Feature: gene Location: 328542-328757 bp Ori: AJA23235.1 Feature: domain Description: SASP Location: 328572-328734 bp Feature: domain Description: SASP Location: 3 28572-3 2873 4 bp Feature: gene Location: 329700-331577 bp Ori: AJA23310.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 329967-330804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 29967-3 3 0804 bp Feature: domain Description: Intron_maturas2 Location: 330942-331233 bp Feature: domain Description: Intron_maturas2 Location: 3 3 0942-3 3 123 3 bp Feature: domain Description: HNHc Note: nucleases Location: 331365-331524 bp Feature: domain Description: HNHc Note: nucleases Location: 3 3 13 65-3 3 1524 bp Feature: gene Location: 353836-354768 bp Feature: gene Location: 354772-355755 bp Ori: AJA23250.1 Feature: domain Description: rpsA Location: 355039-355576 bp Feature: domain Description: rpsA Location: 3 5503 9-3 55576 bp Feature: gene Location: 357688-359562 bp Ori: AJA23251.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 357988-358693 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 57988-3 58693 bp Feature: domain Description: GIIM Note: maturase Location: 358807-358975 bp Feature: domain Description: GIIM Note: maturase Location: 3 58807-3 58975 bp Feature: domain Description: HNHc Note: nucleases Location: 359323-359488 bp Feature: domain Description: HNHc Note: nucleases Location: 3 593 23 -3 59488 bp Feature: gene Location: 360542-362359 bp Ori: AJA23252.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 360812-361634 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 60812-3 6163 4 bp Feature: domain Description: Intron_maturas2 Location: 361715-362009 bp Feature: domain Description: Intron_maturas2 Location: 3 61715-3 62009 bp Feature: domain Description: HNHc Note: nucleases Location: 362156-362330 bp Feature: domain Description: HNHc Note: nucleases Location: 3 62156-3 623 3 0 bp Feature: gene Location: 362951-363220 bp Feature: gene Location: 363286-365076 bp Ori: AJA23254.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 363583-364279 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 63 583 -3 64279 bp Feature: domain Description: HNHc Note: nucleases Location: 364819-364951 bp Feature: domain Description: HNHc Note: nucleases Location: 3 64819-3 64951 bp Feature: gene Location: 366043-367866 bp Ori: AJA23255.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 366313-367141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 663 13 -3 67141 bp Feature: domain Description: Intron_maturas2 Location: 367213-367531 bp Feature: domain Description: Intron_maturas2 Location: 3 67213 -3 6753 1 bp Feature: domain Description: HNHc Note: nucleases Location: 367684-367837 bp Feature: domain Description: HNHc Note: nucleases Location: 3 67684-3 6783 7 bp Feature: gene Location: 368467-369612 bp Feature: gene Location: 369847-370599 bp Ori: AJA23257.1 Feature: domain Description: PRK09183 Location: 369853-370579 bp Feature: domain Description: PRK09183 Location: 3 69853 -3 70579 bp Feature: gene Location: 370589-371884 bp Ori: AJA23258.1 Feature: domain Description: COG4584 Location: 371003-371393 bp Feature: domain Description: COG4584 Location: 3 71003 -3 713 93 bp Feature: gene Location: 372399-373676 bp Ori: AJA23259.1 Feature: domain Description: Replic_Relax Location: 372483-373029 bp Feature: domain Description: Replic_Relax Location: 3 72483 -3 73 029 bp Feature: gene Location: 374322-376199 bp Ori: AJA23311.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 374589-375426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 74589-3 75426 bp Feature: domain Description: Intron_maturas2 Location: 375564-375855 bp Feature: domain Description: Intron_maturas2 Location: 3 75564-3 75855 bp Feature: domain Description: HNHc Note: nucleases Location: 375987-376146 bp Feature: domain Description: HNHc Note: nucleases Location: 3 75987-3 76146 bp Feature: gene Location: 378017-378439 bp Feature: gene Location: 378444-379898 bp Ori: AJA23261.1 Feature: domain Description: CetZ_tubulin-like Location: 378483-378861 bp Feature: domain Description: CetZ_tubulin-like Location: 3 78483 -3 78861 bp Feature: domain Description: CetZ_tubulin-like Location: 378993-379347 bp Feature: domain Description: CetZ_tubulin-like Location: 3 78993 -3 793 47 bp Feature: gene Location: 400484-401035 bp Feature: gene Location: 401149-402924 bp Ori: AJA23282.1 Feature: domain Description: LPD1 Location: 402673-402862 bp Feature: domain Description: LPD1 Location: 402673 -402862 bp Feature: gene Location: 404517-406349 bp Ori: AJA23283.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404829-405528 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 404829-405528 bp Feature: domain Description: HNHc Note: nucleases Location: 406068-406233 bp Feature: domain Description: HNHc Note: nucleases Location: 406068-40623 3 bp Feature: gene Location: 407079-408002 bp Ori: AJA23284.1 Feature: domain Description: T_den_put_tspse Location: 407121-407985 bp Feature: domain Description: T_den_put_tspse Location: 407121-407985 bp Feature: gene Location: 408629-410062 bp Ori: AJA23313.1 Feature: domain Description: MFS_LmrB_MDR_like Location: 408698-410021 bp Feature: domain Description: MFS_LmrB_MDR_like Location: 408698-410021 bp Feature: gene Location: 416560-420579 bp Ori: AJA23291.1 Feature: domain Description: TrbL Location: 416839-417337 bp Feature: domain Description: TrbL Location: 41683 9-4173 3 7 bp Feature: gene Location: 420576-421571 bp Ori: AJA23292.1 Feature: domain Description: CwlT_like Location: 421425-421548 bp Feature: domain Description: CwlT_like Location: 421425-421548 bp Feature: gene Location: 422245-424050 bp Ori: AJA23293.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 422539-423235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42253 9-423 23 5 bp Feature: domain Description: HNHc Note: nucleases Location: 423796-423934 bp Feature: domain Description: HNHc Note: nucleases Location: 423 796-423 93 4 bp Feature: gene Location: 425409-425984 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), Replic_Relax (pfam13814), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), HTH_XRE (smart00530), PRK06763 (F0F1 ATP synthase subunit alpha; Validated), SASP (pfam00269), rpsA (TIGR00717), GIIM (pfam08388)
PRK09183 (transposase/IS protein; Provisional), CetZ_tubulin-like (cd02202), LPD1 (pfam18796), T_den_put_tspse (TIGR01784), MFS_LmrB_MDR_like (cd17503), TrbL (pfam04610), CwlT_like

Seq: CP010092.1 Bacillus thuringiensis serovar galleriae strain HD-29 plasmid pBMB126, complete sequence (126898 bp)
Overview 1 RT 1: 99824-106264 bp Neighborhood of RT #1 [99824, 106264] bZIP_XBP1 bZIP_XBP1 INT_tnpB_C_Tn554 RVT-GII GIIM Feature: gene Location: 99824-100204 bp Ori: AJA23634.1 Feature: domain Description: bZIP_XBP1 Location: 99872-99944 bp Feature: domain Description: bZIP_XBP1 Location: 99872-9994 4 bp Feature: domain Description: bZIP_XBP1 Location: 100094-100187 bp Feature: domain Description: bZIP_XBP1 Location: 100094 -100187 bp Feature: gene Location: 100201-102210 bp Ori: AJA23635.1 Feature: domain Description: INT_tnpB_C_Tn554 Location: 101233-101740 bp Feature: domain Description: INT_tnpB_C_Tn554 Location: 101233-10174 0 bp Feature: gene Location: 103069-104376 bp Ori: AJA23636.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103354-103990 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 103354 -103990 bp Feature: domain Description: GIIM Note: maturase Location: 104068-104293 bp Feature: domain Description: GIIM Note: maturase Location: 104 068-104 293 bp Feature: gene Location: 104550-104729 bp Feature: gene Location: 106046-106264 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bZIP_XBP1 (cd14691), INT_tnpB_C_Tn554 (cd01187), RVT-GII, GIIM (pfam08388)

Seq: CP010089.1 Bacillus thuringiensis serovar galleriae strain HD-29, complete genome (5701188 bp)
Overview 1 RT 1: 694371-701613 bp 2 RT 2: 826498-833623 bp 3 RT 3: 1211147-1217019 bp 4 RT 4: 2027593-2032978 bp 5 RT 5: 2540343-2546764 bp 6 RT 6: 2617153-2621924 bp 7 RT 7: 2746005-2753595 bp 8 RT 8: 2801999-2809127 bp 9 RT 9: 3490184-3496087 bp 10 RT 10: 4172037-4179012 bp 11 RT 11: 4962552-4968381 bp 12 RT 12: 5463781-5469010 bp 13 RT 13: 5567780-5575075 bp Neighborhood of RT #1 [694371, 701633] MrcB Thioredoxin_4 RVT-GII Intron_maturas2 HNHc Amidase_6 tRNA_yibK_trmL Neighborhood of RT #2 [826498, 833706] Usp DUF4027 RVT-GII Intron_maturas2 HNHc MarR MFS_Azr1_MDR_like Neighborhood of RT #3 [1211147, 1217024] PadR RVT-GII Intron_maturas2 HNHc zf-HC2 DUF4179 PRK09639 Neighborhood of RT #4 [2027593, 2033052] LysR DUF4865 RVT-GII Intron_maturas2 HNHc YurZ HTH_MARR Neighborhood of RT #5 [2540343, 2546859] AcrR MFS_MefA_like RVT-GII Intron_maturas2 HNHc EFh_HEF_SCGN Methyltransf_23 Neighborhood of RT #6 [2617153, 2622385] RVT-GII Intron_maturas2 HNHc Bacillus_HBL Bacillus_HBL Neighborhood of RT #7 [2746005, 2753609] B_an_ocin RVT-GII Intron_maturas2 HNHc MID_pPIWI_RE RNaseH_pPIWI_RE DUF3959 Neighborhood of RT #8 [2801999, 2809162] DegV RVT-GII Intron_maturas2 HNHc HTH_MerR-like_sg1 UbiE AraJ Neighborhood of RT #9 [3490184, 3496092] XhlA RVT-GII Intron_maturas2 HNHc PRK06172 thiol_BshB2 Neighborhood of RT #10 [4172037, 4179041] GrpB DUF3886 RVT-GII Intron_maturas2 HNHc DUF4250 RHH_3 MhpC Neighborhood of RT #11 [4962552, 4968381] Replic_Relax RVT-GII Intron_maturas2 HNHc Neighborhood of RT #12 [5463781, 5469063] CcmA PRK12896 RVT-GII Intron_maturas2 HNHc Neighborhood of RT #13 [5567780, 5575230] BCCT COG4362 RVT-GII Intron_maturas2 HNHc SodA SDR_a1 Feature: gene Location: 694371-695147 bp Ori: AJA18008.1 Feature: domain Description: MrcB Location: 694554-695088 bp Feature: domain Description: MrcB Location: 6945 5 4-695 088 bp Feature: gene Location: 695336-695986 bp Ori: AJA18009.1 Feature: domain Description: Thioredoxin_4 Location: 695468-695972 bp Feature: domain Description: Thioredoxin_4 Location: 695 468-695 972 bp Feature: gene Location: 697910-699787 bp Ori: AJA22839.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698177-699014 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 698177-699014 bp Feature: domain Description: Intron_maturas2 Location: 699152-699443 bp Feature: domain Description: Intron_maturas2 Location: 69915 2-699443 bp Feature: domain Description: HNHc Note: nucleases Location: 699575-699734 bp Feature: domain Description: HNHc Note: nucleases Location: 6995 75 -699734 bp Feature: gene Location: 700199-701086 bp Ori: AJA18010.1 Feature: domain Description: Amidase_6 Location: 700607-701066 bp Feature: domain Description: Amidase_6 Location: 700607-701066 bp Feature: gene Location: 701145-701633 bp Ori: AJA18011.1 Feature: domain Description: tRNA_yibK_trmL Location: 701154-701613 bp Feature: domain Description: tRNA_yibK_trmL Location: 70115 4-701613 bp Feature: gene Location: 826498-826920 bp Ori: AJA18111.1 Feature: domain Description: Usp Location: 826501-826918 bp Feature: domain Description: Usp Location: 8265 01-826918 bp Feature: gene Location: 827124-827240 bp Ori: AJA22843.1 Feature: domain Description: DUF4027 Location: 827127-827232 bp Feature: domain Description: DUF4027 Location: 827127-827232 bp Feature: gene Location: 827961-829838 bp Ori: AJA22844.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828228-829065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 828228-829065 bp Feature: domain Description: Intron_maturas2 Location: 829203-829494 bp Feature: domain Description: Intron_maturas2 Location: 829203-829494 bp Feature: domain Description: HNHc Note: nucleases Location: 829626-829785 bp Feature: domain Description: HNHc Note: nucleases Location: 829626-829785 bp Feature: gene Location: 831615-832073 bp Ori: AJA18112.1 Feature: domain Description: MarR Location: 831675-832029 bp Feature: domain Description: MarR Location: 831675 -832029 bp Feature: gene Location: 832093-833706 bp Ori: AJA18113.1 Feature: domain Description: MFS_Azr1_MDR_like Location: 832141-833623 bp Feature: domain Description: MFS_Azr1_MDR_like Location: 832141-833623 bp Feature: gene Location: 1211147-1211392 bp Feature: gene Location: 1211547-1211861 bp Ori: AJA18493.1 Feature: domain Description: PadR Location: 1211595-1211805 bp Feature: domain Description: PadR Location: 12115 95 -1211805 bp Feature: gene Location: 1212535-1214412 bp Ori: AJA22854.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1212802-1213639 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1212802-1213639 bp Feature: domain Description: Intron_maturas2 Location: 1213777-1214068 bp Feature: domain Description: Intron_maturas2 Location: 1213777-1214068 bp Feature: domain Description: HNHc Note: nucleases Location: 1214200-1214359 bp Feature: domain Description: HNHc Note: nucleases Location: 1214200-121435 9 bp Feature: gene Location: 1215513-1216490 bp Ori: AJA18494.1 Feature: domain Description: zf-HC2 Location: 1215546-1215621 bp Feature: domain Description: zf-HC2 Location: 1215 5 46-1215 621 bp Feature: domain Description: DUF4179 Location: 1215825-1216116 bp Feature: domain Description: DUF4179 Location: 1215 825 -1216116 bp Feature: gene Location: 1216494-1217024 bp Ori: AJA18495.1 Feature: domain Description: PRK09639 Location: 1216533-1217019 bp Feature: domain Description: PRK09639 Location: 12165 33-1217019 bp Feature: gene Location: 2027593-2028381 bp Ori: AJA19334.1 Feature: domain Description: LysR Location: 2027596-2028268 bp Feature: domain Description: LysR Location: 20275 96-2028268 bp Feature: gene Location: 2028502-2029050 bp Ori: AJA19335.1 Feature: domain Description: DUF4865 Location: 2028505-2029045 bp Feature: domain Description: DUF4865 Location: 20285 05 -2029045 bp Feature: gene Location: 2029421-2031298 bp Ori: AJA22873.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2029688-2030525 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2029688-20305 25 bp Feature: domain Description: Intron_maturas2 Location: 2030663-2030954 bp Feature: domain Description: Intron_maturas2 Location: 2030663-203095 4 bp Feature: domain Description: HNHc Note: nucleases Location: 2031086-2031245 bp Feature: domain Description: HNHc Note: nucleases Location: 2031086-2031245 bp Feature: gene Location: 2032114-2032455 bp Ori: AJA22874.1 Feature: domain Description: YurZ Location: 2032159-2032441 bp Feature: domain Description: YurZ Location: 203215 9-2032441 bp Feature: gene Location: 2032609-2033052 bp Ori: AJA19336.1 Feature: domain Description: HTH_MARR Location: 2032693-2032978 bp Feature: domain Description: HTH_MARR Location: 2032693-2032978 bp Feature: gene Location: 2540343-2540978 bp Ori: AJA19812.1 Feature: domain Description: AcrR Location: 2540367-2540817 bp Feature: domain Description: AcrR Location: 25 40367-25 40817 bp Feature: gene Location: 2541043-2542272 bp Ori: AJA19813.1 Feature: domain Description: MFS_MefA_like Location: 2541079-2542252 bp Feature: domain Description: MFS_MefA_like Location: 25 41079-25 4225 2 bp Feature: gene Location: 2542904-2544781 bp Ori: AJA22889.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2543171-2544008 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25 43171-25 44008 bp Feature: domain Description: Intron_maturas2 Location: 2544146-2544437 bp Feature: domain Description: Intron_maturas2 Location: 25 44146-25 44437 bp Feature: domain Description: HNHc Note: nucleases Location: 2544569-2544728 bp Feature: domain Description: HNHc Note: nucleases Location: 25 445 69-25 44728 bp Feature: gene Location: 2544943-2545416 bp Ori: AJA19814.1 Feature: domain Description: EFh_HEF_SCGN Location: 2545012-2545267 bp Feature: domain Description: EFh_HEF_SCGN Location: 25 45 012-25 45 267 bp Feature: gene Location: 2546149-2546859 bp Ori: AJA19815.1 Feature: domain Description: Methyltransf_23 Location: 2546311-2546764 bp Feature: domain Description: Methyltransf_23 Location: 25 46311-25 46764 bp Feature: gene Location: 2617153-2619030 bp Ori: AJA22891.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2617420-2618257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2617420-261825 7 bp Feature: domain Description: Intron_maturas2 Location: 2618395-2618686 bp Feature: domain Description: Intron_maturas2 Location: 2618395 -2618686 bp Feature: domain Description: HNHc Note: nucleases Location: 2618818-2618977 bp Feature: domain Description: HNHc Note: nucleases Location: 2618818-2618977 bp Feature: gene Location: 2619994-2621220 bp Ori: AJA22892.1 Feature: domain Description: Bacillus_HBL Location: 2620126-2620678 bp Feature: domain Description: Bacillus_HBL Location: 2620126-2620678 bp Feature: gene Location: 2621252-2622385 bp Ori: AJA19853.1 Feature: domain Description: Bacillus_HBL Location: 2621396-2621924 bp Feature: domain Description: Bacillus_HBL Location: 2621396-2621924 bp Feature: gene Location: 2746005-2746325 bp Ori: AJA19959.1 Feature: domain Description: B_an_ocin Location: 2746008-2746281 bp Feature: domain Description: B_an_ocin Location: 2746008-2746281 bp Feature: gene Location: 2746815-2747300 bp Feature: gene Location: 2748364-2750241 bp Ori: AJA22899.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748631-2749468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2748631-2749468 bp Feature: domain Description: Intron_maturas2 Location: 2749606-2749897 bp Feature: domain Description: Intron_maturas2 Location: 2749606-2749897 bp Feature: domain Description: HNHc Note: nucleases Location: 2750029-2750188 bp Feature: domain Description: HNHc Note: nucleases Location: 275 0029-275 0188 bp Feature: gene Location: 2751090-2752634 bp Ori: AJA22900.1 Feature: domain Description: MID_pPIWI_RE Location: 2751501-2751813 bp Feature: domain Description: MID_pPIWI_RE Location: 275 15 01-275 1813 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 2751879-2752542 bp Feature: domain Description: RNaseH_pPIWI_RE Location: 275 1879-275 25 42 bp Feature: gene Location: 2752842-2753609 bp Ori: AJA19961.1 Feature: domain Description: DUF3959 Location: 2752869-2753595 bp Feature: domain Description: DUF395 9 Location: 275 2869-275 35 95 bp Feature: gene Location: 2801999-2802805 bp Ori: AJA20006.1 Feature: domain Description: DegV Location: 2802020-2802803 bp Feature: domain Description: DegV Location: 2802020-2802803 bp Feature: gene Location: 2803080-2803265 bp Feature: gene Location: 2803897-2805774 bp Ori: AJA22901.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2804164-2805001 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2804164-2805 001 bp Feature: domain Description: Intron_maturas2 Location: 2805139-2805430 bp Feature: domain Description: Intron_maturas2 Location: 2805 139-2805 430 bp Feature: domain Description: HNHc Note: nucleases Location: 2805562-2805721 bp Feature: domain Description: HNHc Note: nucleases Location: 2805 5 62-2805 721 bp Feature: gene Location: 2806667-2807890 bp Ori: AJA20008.1 Feature: domain Description: HTH_MerR-like_sg1 Location: 2806670-2806982 bp Feature: domain Description: HTH_MerR-like_sg1 Location: 2806670-2806982 bp Feature: domain Description: UbiE Location: 2807327-2807597 bp Feature: domain Description: UbiE Location: 2807327-28075 97 bp Feature: gene Location: 2807978-2809162 bp Ori: AJA20009.1 Feature: domain Description: AraJ Location: 2807981-2809127 bp Feature: domain Description: AraJ Location: 2807981-2809127 bp Feature: gene Location: 3490184-3490408 bp Ori: AJA20655.1 Feature: domain Description: XhlA Location: 3490202-3490391 bp Feature: domain Description: XhlA Location: 3490202-3490391 bp Feature: gene Location: 3490727-3491005 bp Feature: gene Location: 3491884-3493761 bp Ori: AJA22932.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3492151-3492988 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 349215 1-3492988 bp Feature: domain Description: Intron_maturas2 Location: 3493126-3493417 bp Feature: domain Description: Intron_maturas2 Location: 3493126-3493417 bp Feature: domain Description: HNHc Note: nucleases Location: 3493549-3493708 bp Feature: domain Description: HNHc Note: nucleases Location: 34935 49-3493708 bp Feature: gene Location: 3494574-3495317 bp Ori: AJA20657.1 Feature: domain Description: PRK06172 Location: 3494577-3495312 bp Feature: domain Description: PRK06172 Location: 34945 77-3495 312 bp Feature: gene Location: 3495430-3496092 bp Ori: AJA20658.1 Feature: domain Description: thiol_BshB2 Location: 3495439-3496087 bp Feature: domain Description: thiol_BshB2 Location: 3495 439-3496087 bp Feature: gene Location: 4172037-4172561 bp Ori: AJA21296.1 Feature: domain Description: GrpB Location: 4172049-4172523 bp Feature: domain Description: GrpB Location: 4172049-41725 23 bp Feature: gene Location: 4172628-4172891 bp Ori: AJA21297.1 Feature: domain Description: DUF3886 Location: 4172685-4172883 bp Feature: domain Description: DUF3886 Location: 4172685 -4172883 bp Feature: gene Location: 4174372-4176249 bp Ori: AJA22952.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4174639-4175476 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4174639-4175 476 bp Feature: domain Description: Intron_maturas2 Location: 4175614-4175905 bp Feature: domain Description: Intron_maturas2 Location: 4175 614-4175 905 bp Feature: domain Description: HNHc Note: nucleases Location: 4176037-4176196 bp Feature: domain Description: HNHc Note: nucleases Location: 4176037-4176196 bp Feature: gene Location: 4177445-4177921 bp Ori: AJA21298.1 Feature: domain Description: DUF4250 Location: 4177502-4177586 bp Feature: domain Description: DUF425 0 Location: 41775 02-41775 86 bp Feature: domain Description: RHH_3 Location: 4177763-4177892 bp Feature: domain Description: RHH_3 Location: 4177763-4177892 bp Feature: gene Location: 4178043-4179041 bp Ori: AJA21299.1 Feature: domain Description: MhpC Location: 4178178-4179012 bp Feature: domain Description: MhpC Location: 4178178-4179012 bp Feature: gene Location: 4962552-4963379 bp Feature: gene Location: 4963389-4964009 bp Ori: AJA22100.1 Feature: domain Description: Replic_Relax Location: 4963437-4963902 bp Feature: domain Description: Replic_Relax Location: 4963437-4963902 bp Feature: gene Location: 4964529-4966406 bp Ori: AJA22979.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4964796-4965633 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4964796-4965 633 bp Feature: domain Description: Intron_maturas2 Location: 4965771-4966062 bp Feature: domain Description: Intron_maturas2 Location: 4965 771-4966062 bp Feature: domain Description: HNHc Note: nucleases Location: 4966194-4966353 bp Feature: domain Description: HNHc Note: nucleases Location: 4966194-496635 3 bp Feature: gene Location: 4967885-4968067 bp Feature: gene Location: 4968064-4968381 bp Feature: gene Location: 5463781-5464683 bp Ori: AJA22619.1 Feature: domain Description: CcmA Location: 5463784-5464654 bp Feature: domain Description: CcmA Location: 5 463784-5 46465 4 bp Feature: gene Location: 5464889-5465635 bp Ori: AJA22620.1 Feature: domain Description: PRK12896 Location: 5464892-5465630 bp Feature: domain Description: PRK12896 Location: 5 464892-5 465 630 bp Feature: gene Location: 5467186-5469063 bp Ori: AJA22999.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5467453-5468290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 46745 3-5 468290 bp Feature: domain Description: Intron_maturas2 Location: 5468428-5468719 bp Feature: domain Description: Intron_maturas2 Location: 5 468428-5 468719 bp Feature: domain Description: HNHc Note: nucleases Location: 5468851-5469010 bp Feature: domain Description: HNHc Note: nucleases Location: 5 46885 1-5 469010 bp Feature: gene Location: 5567780-5569348 bp Ori: AJA22705.1 Feature: domain Description: BCCT Location: 5567816-5569259 bp Feature: domain Description: BCCT Location: 5 5 67816-5 5 6925 9 bp Feature: gene Location: 5569709-5569936 bp Ori: AJA22706.1 Feature: domain Description: COG4362 Location: 5569712-5569934 bp Feature: domain Description: COG4362 Location: 5 5 69712-5 5 69934 bp Feature: gene Location: 5570107-5571984 bp Ori: AJA23000.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5570374-5571211 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5 5 70374-5 5 71211 bp Feature: domain Description: Intron_maturas2 Location: 5571349-5571640 bp Feature: domain Description: Intron_maturas2 Location: 5 5 71349-5 5 71640 bp Feature: domain Description: HNHc Note: nucleases Location: 5571772-5571931 bp Feature: domain Description: HNHc Note: nucleases Location: 5 5 71772-5 5 71931 bp Feature: gene Location: 5573634-5574260 bp Ori: AJA22707.1 Feature: domain Description: SodA Location: 5573643-5574243 bp Feature: domain Description: SodA Location: 5 5 73643-5 5 74243 bp Feature: gene Location: 5574349-5575230 bp Ori: AJA22708.1 Feature: domain Description: SDR_a1 Location: 5574364-5575075 bp Feature: domain Description: SDR_a1 Location: 5 5 74364-5 5 75 075 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT MrcB (COG0744), Thioredoxin_4 (pfam13462), RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), Amidase_6 (pfam12671), tRNA_yibK_trmL (TIGR00185), Usp (pfam00582), DUF4027 (pfam13219), MarR (pfam01047)
MFS_Azr1_MDR_like (cd17502), PadR (pfam03551), zf-HC2 (pfam13490), DUF4179 (pfam13786), PRK09639 (RNA polymerase sigma factor SigX; Provisional), LysR (COG0583), DUF4865 (pfam16157), YurZ (COG0599), HTH_MARR (smart00347), AcrR (COG1309)
MFS_MefA_like (cd06173), EFh_HEF_SCGN (cd16178), Methyltransf_23 (pfam13489), Bacillus_HBL (pfam05791), B_an_ocin (TIGR03601), MID_pPIWI_RE (pfam18157), RNaseH_pPIWI_RE, DUF3959 (pfam13105), DegV (TIGR00762), HTH_MerR-like_sg1 (cd04777)
UbiE (COG2226), AraJ (COG2814), XhlA (pfam10779), PRK06172 (SDR family oxidoreductase), thiol_BshB2 (TIGR04000), GrpB (pfam04229), DUF3886 (pfam13025), DUF4250 (pfam14056), RHH_3 (pfam12651), MhpC (COG0596)
Replic_Relax (pfam13814), CcmA (COG4133), PRK12896 (methionine aminopeptidase; Reviewed), BCCT (pfam02028), COG4362 (Nitric oxide synthase, oxygenase domain ), SodA (COG0605), SDR_a1 (cd05265)

Seq: CP010091.1 Bacillus thuringiensis serovar galleriae strain HD-29 plasmid pBMB267, complete sequence (267359 bp)
Overview 1 RT 1: 36336-48267 bp 2 RT 2: 57484-63264 bp 3 RT 3: 89493-99199 bp 4 RT 4: 112154-116841 bp 5 RT 5: 146065-150401 bp 6 RT 6: 161310-167209 bp Neighborhood of RT #1 [36336, 51509] RVT-GII Intron_maturas2 HNHc CwlT_like RVT-GII HNHc CwlT_like RVT-GII HNHc CwlT_like TrbL Neighborhood of RT #2 [57484, 63264] DUF3854 LPD1 RVT-GII HNHc Neighborhood of RT #3 [89493, 99273] RVT-GII Intron_maturas2 HNHc RVT-GII HNHc RVT-GII GIIM HNHc Neighborhood of RT #4 [112154, 116852] E1_enzyme_family RVT-GII Intron_maturas2 HNHc NT_KNTase_like Neighborhood of RT #5 [146065, 150991] AdoMet_MTases RVT-GII GIIM Neighborhood of RT #6 [161310, 167220] LolD LolE RVT-GII Intron_maturas2 HNHc PHA02517 Feature: gene Location: 36336-36719 bp Feature: gene Location: 36881-37456 bp Feature: gene Location: 38508-40331 bp Ori: AJA23352.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38772-39606 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 38772-396 06 bp Feature: domain Description: Intron_maturas2 Location: 39675-40014 bp Feature: domain Description: Intron_maturas2 Location: 396 75-40014 bp Feature: domain Description: HNHc Note: nucleases Location: 40152-40308 bp Feature: domain Description: HNHc Note: nucleases Location: 40152-40308 bp Feature: gene Location: 40907-41098 bp Ori: AJA23353.1 Feature: domain Description: CwlT_like Location: 40934-41090 bp Feature: domain Description: CwlT_like Location: 40934-41090 bp Feature: gene Location: 41167-42963 bp Ori: AJA23354.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41425-42130 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41425-42130 bp Feature: domain Description: HNHc Note: nucleases Location: 42691-42826 bp Feature: domain Description: HNHc Note: nucleases Location: 426 91-42826 bp Feature: gene Location: 43275-43493 bp Feature: gene Location: 43736-43903 bp Ori: AJA23356.1 Feature: domain Description: CwlT_like Location: 43778-43886 bp Feature: domain Description: CwlT_like Location: 43778-43886 bp Feature: gene Location: 44019-45824 bp Ori: AJA23357.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44313-45009 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 44313-45009 bp Feature: domain Description: HNHc Note: nucleases Location: 45570-45708 bp Feature: domain Description: HNHc Note: nucleases Location: 45570-45708 bp Feature: gene Location: 46498-47493 bp Ori: AJA23358.1 Feature: domain Description: CwlT_like Location: 47347-47470 bp Feature: domain Description: CwlT_like Location: 47347-47470 bp Feature: gene Location: 47490-51509 bp Ori: AJA23359.1 Feature: domain Description: TrbL Location: 47769-48267 bp Feature: domain Description: TrbL Location: 4776 9-4826 7 bp Feature: gene Location: 57484-58797 bp Ori: AJA23368.1 Feature: domain Description: DUF3854 Location: 58429-58768 bp Feature: domain Description: DUF3854 Location: 58429-5876 8 bp Feature: gene Location: 58787-59584 bp Ori: AJA23369.1 Feature: domain Description: LPD1 Location: 59333-59528 bp Feature: domain Description: LPD1 Location: 59333-59528 bp Feature: gene Location: 59656-61452 bp Ori: AJA23370.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59950-60646 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 59950-6 06 46 bp Feature: domain Description: HNHc Note: nucleases Location: 61246-61321 bp Feature: domain Description: HNHc Note: nucleases Location: 6 1246 -6 1321 bp Feature: gene Location: 61484-61738 bp Feature: gene Location: 62173-63264 bp Feature: gene Location: 89493-89879 bp Feature: gene Location: 89897-91042 bp Feature: gene Location: 91643-93466 bp Ori: AJA23400.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91913-92741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91913-92741 bp Feature: domain Description: Intron_maturas2 Location: 92813-93131 bp Feature: domain Description: Intron_maturas2 Location: 92813-93131 bp Feature: domain Description: HNHc Note: nucleases Location: 93284-93437 bp Feature: domain Description: HNHc Note: nucleases Location: 93284-93437 bp Feature: gene Location: 94433-96223 bp Ori: AJA23401.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94730-95426 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 94730-95426 bp Feature: domain Description: HNHc Note: nucleases Location: 95966-96098 bp Feature: domain Description: HNHc Note: nucleases Location: 9596 6 -96 098 bp Feature: gene Location: 96289-96726 bp Feature: gene Location: 97399-99273 bp Ori: AJA23403.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 97699-98404 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976 99-98404 bp Feature: domain Description: GIIM Note: maturase Location: 98518-98686 bp Feature: domain Description: GIIM Note: maturase Location: 98518-986 86 bp Feature: domain Description: HNHc Note: nucleases Location: 99034-99199 bp Feature: domain Description: HNHc Note: nucleases Location: 99034-99199 bp Feature: gene Location: 112154-112555 bp Feature: gene Location: 112568-112750 bp Ori: AJA23417.1 Feature: domain Description: E1_enzyme_family Location: 112616-112733 bp Feature: domain Description: E1_enzyme_family Location: 1126 16 -112733 bp Feature: gene Location: 113382-115259 bp Ori: AJA23517.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 113649-114486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1136 49-114486 bp Feature: domain Description: Intron_maturas2 Location: 114624-114915 bp Feature: domain Description: Intron_maturas2 Location: 1146 24-114915 bp Feature: domain Description: HNHc Note: nucleases Location: 115047-115206 bp Feature: domain Description: HNHc Note: nucleases Location: 115047-115206 bp Feature: gene Location: 116073-116444 bp Feature: gene Location: 116466-116852 bp Ori: AJA23419.1 Feature: domain Description: NT_KNTase_like Location: 116541-116841 bp Feature: domain Description: NT_KNTase_like Location: 116 541-116 841 bp Feature: gene Location: 146065-147156 bp Ori: AJA23440.1 Feature: domain Description: AdoMet_MTases Location: 146176-146590 bp Feature: domain Description: AdoMet_MTases Location: 146 176 -146 590 bp Feature: gene Location: 147172-147399 bp Feature: gene Location: 149126-150991 bp Ori: AJA23442.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149426-150131 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 149426 -150131 bp Feature: domain Description: GIIM Note: maturase Location: 150218-150401 bp Feature: domain Description: GIIM Note: maturase Location: 150218-150401 bp Feature: gene Location: 161310-162062 bp Ori: AJA23451.1 Feature: domain Description: LolD Location: 161325-161991 bp Feature: domain Description: LolD Location: 16 1325-16 1991 bp Feature: gene Location: 162070-163221 bp Ori: AJA23452.1 Feature: domain Description: LolE Location: 162082-163168 bp Feature: domain Description: LolE Location: 16 2082-16 316 8 bp Feature: gene Location: 163810-165687 bp Ori: AJA23520.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 164077-164914 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 16 4077-16 4914 bp Feature: domain Description: Intron_maturas2 Location: 165052-165343 bp Feature: domain Description: Intron_maturas2 Location: 16 5052-16 5343 bp Feature: domain Description: HNHc Note: nucleases Location: 165475-165634 bp Feature: domain Description: HNHc Note: nucleases Location: 16 5475-16 56 34 bp Feature: gene Location: 165820-166377 bp Feature: gene Location: 166411-167220 bp Ori: AJA23454.1 Feature: domain Description: PHA02517 Location: 166441-167209 bp Feature: domain Description: PHA02517 Location: 16 6 441-16 7209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, Intron_maturas2 (pfam01348), HNHc (smart00507), CwlT_like, TrbL (pfam04610), DUF3854 (pfam12965), LPD1 (pfam18796), GIIM (pfam08388), E1_enzyme_family (cl22428), NT_KNTase_like (cd05403)
AdoMet_MTases (cl17173), LolD (COG1136), LolE (COG4591), PHA02517 (putative transposase OrfB; Reviewed)

Seq: CP010094.1 Bacillus thuringiensis serovar galleriae strain HD-29 plasmid pBMB55, complete sequence (55460 bp)
Overview 1 RT 1: 154-6888 bp Neighborhood of RT #1 [154, 6935] RVT-GII GIIM DEDD_Tnp_IS110 COG3547 recomb_XerD Feature: gene Location: 154-372 bp Feature: gene Location: 1689-1868 bp Feature: gene Location: 2042-3349 bp Ori: AJA23743.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2327-2963 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2327 -2963 bp Feature: domain Description: GIIM Note: maturase Location: 3041-3266 bp Feature: domain Description: GIIM Note: maturase Location: 3041-3266 bp Feature: gene Location: 4561-5790 bp Ori: AJA23744.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 4576-5056 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 457 6-5056 bp Feature: domain Description: COG3547 Location: 5296-5722 bp Feature: domain Description: COG3547 Location: 5296-57 22 bp Feature: gene Location: 6000-6935 bp Ori: AJA23745.1 Feature: domain Description: recomb_XerD Location: 6030-6888 bp Feature: domain Description: recomb_XerD Location: 6030-6888 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), DEDD_Tnp_IS110 (pfam01548), COG3547 (Transposase ), recomb_XerD (TIGR02225)