myRT

myRT report for GCA_000807255.1_ASM80725v1

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Seq: CP009268.1 Clostridium pasteurianum DSM 525 = ATCC 6013, complete genome (4352101 bp)
Overview 1 RT 1: 974077-978024 bp 2 RT 2: 2295639-2300799 bp 3 RT 3: 4134511-4145637 bp Neighborhood of RT #1 [974077, 978098] WrbA WrbA RVT-GII GIIM PRK07714 Neighborhood of RT #2 [2295639, 2300834] PerM YrrD RVT-GII GIIM NifU_clost FeS_nifS Neighborhood of RT #3 [4134511, 4145645] BaeS OmpR RVT-GII GIIM RVT-GII HTH_32 rve Mu-transpos_C pepcterm_ATPase RVT-GII RVT-GII MFS_MdfA_MDR_like trans_reg_C Feature: gene Location: 974077-974658 bp Ori: AJA50978.1 Feature: domain Description: WrbA Location: 974080-974488 bp Feature: domain Description: WrbA Location: 974080-974488 bp Feature: gene Location: 974651-975322 bp Ori: AJA50979.1 Feature: domain Description: WrbA Location: 974789-974957 bp Feature: domain Description: WrbA Location: 974789-974957 bp Feature: gene Location: 976015-976707 bp Ori: AJA50980.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976039-976342 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 976039-976342 bp Feature: domain Description: GIIM Note: maturase Location: 976426-976618 bp Feature: domain Description: GIIM Note: maturase Location: 976426-97661 8 bp Feature: gene Location: 976890-977078 bp Feature: gene Location: 977613-978098 bp Ori: AJA50982.1 Feature: domain Description: PRK07714 Location: 977880-978024 bp Feature: domain Description: PRK0771 4 Location: 977880-978024 bp Feature: gene Location: 2295639-2296652 bp Ori: AJA52208.1 Feature: domain Description: PerM Location: 2295654-2296638 bp Feature: domain Description: PerM Location: 2295654-2296638 bp Feature: gene Location: 2296636-2297163 bp Ori: AJA52209.1 Feature: domain Description: YrrD Location: 2296657-2297158 bp Feature: domain Description: YrrD Location: 2296657-22971 58 bp Feature: gene Location: 2297268-2298554 bp Ori: AJA52210.1 Gene: ltrA1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2297517-2298201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 229751 7-2298201 bp Feature: domain Description: GIIM Note: maturase Location: 2298273-2298498 bp Feature: domain Description: GIIM Note: maturase Location: 2298273-2298498 bp Feature: gene Location: 2299207-2299638 bp Ori: AJA52211.1 Gene: iscU2 Feature: domain Description: NifU_clost Location: 2299216-2299570 bp Feature: domain Description: NifU_clost Location: 229921 6-2299570 bp Feature: gene Location: 2299641-2300834 bp Ori: AJA52212.1 Gene: iscS3 Feature: domain Description: FeS_nifS Location: 2299659-2300799 bp Feature: domain Description: FeS_nifS Location: 2299659-2300799 bp Feature: gene Location: 4134511-4135770 bp Ori: AJA53904.1 Gene: phoR6 Feature: domain Description: BaeS Location: 4134826-4135756 bp Feature: domain Description: BaeS Location: 41 34826-41 35756 bp Feature: gene Location: 4135767-4136477 bp Ori: AJA53905.1 Feature: domain Description: OmpR Location: 4135794-4136454 bp Feature: domain Description: OmpR Location: 41 35794-41 36454 bp Feature: gene Location: 4136582-4137508 bp Ori: AJA53906.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4136708-4137155 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 36708-41 371 55 bp Feature: domain Description: GIIM Note: maturase Location: 4137227-4137452 bp Feature: domain Description: GIIM Note: maturase Location: 41 37227-41 37452 bp Feature: gene Location: 4137495-4138049 bp Ori: AJA53907.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4137531-4137702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 37531 -41 37702 bp Feature: gene Location: 4138181-4138753 bp Feature: gene Location: 4138953-4140215 bp Ori: AJA53909.1 Feature: domain Description: HTH_32 Location: 4139124-4139352 bp Feature: domain Description: HTH_32 Location: 41 391 24-41 39352 bp Feature: domain Description: rve Location: 4139427-4139772 bp Feature: domain Description: rve Location: 41 39427-41 39772 bp Feature: domain Description: Mu-transpos_C Location: 4139952-4140114 bp Feature: domain Description: Mu-transpos_C Location: 41 39952-41 401 1 4 bp Feature: gene Location: 4140231-4141037 bp Ori: AJA53910.1 Gene: exeA1 Feature: domain Description: pepcterm_ATPase Location: 4140234-4141020 bp Feature: domain Description: pepcterm_ATPase Location: 41 40234-41 41 020 bp Feature: gene Location: 4141239-4142042 bp Ori: AJA53911.1 Gene: ltrA2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4141494-4142013 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 41 494-41 4201 3 bp Feature: gene Location: 4142526-4143023 bp Ori: AJA53912.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4142775-4143012 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 42775-41 4301 2 bp Feature: gene Location: 4143682-4144902 bp Ori: AJA53913.1 Gene: bcr Feature: domain Description: MFS_MdfA_MDR_like Location: 4143757-4144870 bp Feature: domain Description: MFS_MdfA_MDR_like Location: 41 43757-41 44870 bp Feature: gene Location: 4145211-4145645 bp Ori: AJA53914.1 Feature: domain Description: trans_reg_C Location: 4145439-4145637 bp Feature: domain Description: trans_reg_C Location: 41 45439-41 45637 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT WrbA (COG0655), RVT-GII, GIIM (pfam08388), PRK07714 (YlxQ family RNA-binding protein), PerM (COG0628), YrrD (COG3881), NifU_clost (TIGR03419), FeS_nifS (TIGR03402), BaeS (COG0642), OmpR (COG0745)
HTH_32 (pfam13565), rve (pfam00665), Mu-transpos_C (pfam09299), pepcterm_ATPase (TIGR03015), MFS_MdfA_MDR_like (cd17320), trans_reg_C (cd00383)