myRT

myRT report for GCA_000807315.1_ASM80731v1

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Seq: CP010313.1 Bradyrhizobium japonicum strain E109, complete genome (9224208 bp)
Overview 1 RT 1: 8095417-8100451 bp 2 RT 2: 8296100-8304569 bp 3 RT 3: 9123419-9128090 bp 4 RT 4: 9139790-9143036 bp Neighborhood of RT #1 [8095417, 8100451] Tra5 HTH_Tnp_1 RVT-GII GIIM Neighborhood of RT #2 [8296100, 8304577] CpaD RVT-GII IstB_IS21_ATP IstB_IS21 COG4584 COG4584 Neighborhood of RT #3 [9123419, 9128152] INT_RitC_C_like DDE_Tnp_IS66 RVT-GII GIIM LomR PHA02518 Neighborhood of RT #4 [9139790, 9143305] COG5659 RVT-GII RVT-GII RVT-GII Rve Feature: gene Location: 8095417-8096289 bp Ori: AJA65411.1 Feature: domain Description: Tra5 Location: 8095459-8096167 bp Feature: domain Description: Tra5 Location: 8095459-80961 67 bp Feature: gene Location: 8096267-8096521 bp Ori: AJA65412.1 Feature: domain Description: HTH_Tnp_1 Location: 8096273-8096480 bp Feature: domain Description: HTH_Tnp_1 Location: 8096273-8096480 bp Feature: gene Location: 8096698-8097942 bp Ori: AJA65413.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8096899-8097556 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8096899-8097556 bp Feature: domain Description: GIIM Note: maturase Location: 8097634-8097862 bp Feature: domain Description: GIIM Note: maturase Location: 8097634-8097862 bp Feature: gene Location: 8099451-8099684 bp Feature: gene Location: 8100152-8100451 bp Feature: gene Location: 8296100-8296762 bp Ori: AJA65557.1 Feature: domain Description: CpaD Location: 8296133-8296673 bp Feature: domain Description: CpaD Location: 82961 33-8296673 bp Feature: gene Location: 8296958-8299273 bp Feature: gene Location: 8299566-8300975 bp Ori: AJA65559.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8299920-8300610 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 8299920-830061 0 bp Feature: gene Location: 8302482-8303192 bp Ori: AJA65560.1 Feature: domain Description: IstB_IS21_ATP Location: 8302503-8302587 bp Feature: domain Description: IstB_IS21 _ATP Location: 8302503-8302587 bp Feature: domain Description: IstB_IS21 Location: 8302593-8303118 bp Feature: domain Description: IstB_IS21 Location: 8302593-83031 1 8 bp Feature: gene Location: 8303198-8304577 bp Ori: AJA65561.1 Feature: domain Description: COG4584 Location: 8303294-8304095 bp Feature: domain Description: COG4584 Location: 8303294-8304095 bp Feature: domain Description: COG4584 Location: 8304125-8304569 bp Feature: domain Description: COG4584 Location: 83041 25-8304569 bp Feature: gene Location: 9123419-9124285 bp Ori: AJA66172.1 Feature: domain Description: INT_RitC_C_like Location: 9123434-9123989 bp Feature: domain Description: INT_RitC_C_like Location: 91 23434-91 23989 bp Feature: gene Location: 9124522-9124791 bp Ori: AJA66173.1 Feature: domain Description: DDE_Tnp_IS66 Location: 9124528-9124774 bp Feature: domain Description: DDE_Tnp_IS66 Location: 91 24528-91 24774 bp Feature: gene Location: 9124940-9126271 bp Ori: AJA66174.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9125234-9125897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 25234-91 25897 bp Feature: domain Description: GIIM Note: maturase Location: 9125963-9126185 bp Feature: domain Description: GIIM Note: maturase Location: 91 25963-91 261 85 bp Feature: gene Location: 9126204-9127040 bp Ori: AJA66175.1 Feature: domain Description: LomR Location: 9126240-9126951 bp Feature: domain Description: LomR Location: 91 26240-91 26951 bp Feature: gene Location: 9127484-9128152 bp Ori: AJA66176.1 Feature: domain Description: PHA02518 Location: 9127493-9128090 bp Feature: domain Description: PHA0251 8 Location: 91 27493-91 28090 bp Feature: gene Location: 9139790-9140194 bp Feature: gene Location: 9140466-9140822 bp Ori: AJA67219.1 Feature: domain Description: COG5659 Location: 9140565-9140697 bp Feature: domain Description: COG5659 Location: 91 40565-91 40697 bp Feature: gene Location: 9140921-9141607 bp Ori: AJA66183.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9140924-9141230 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 40924-91 41 230 bp Feature: gene Location: 9141640-9141834 bp Ori: AJA66184.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9141670-9141823 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 41 670-91 41 823 bp Feature: gene Location: 9141839-9142399 bp Ori: AJA66185.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9142247-9142325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 91 42247-91 42325 bp Feature: gene Location: 9142406-9142735 bp Feature: gene Location: 9142823-9143305 bp Ori: AJA66187.1 Feature: domain Description: Rve Location: 9142826-9143036 bp Feature: domain Description: Rve Location: 91 42826-91 43036 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Tra5 (COG2801), HTH_Tnp_1 (pfam01527), RVT-GII, GIIM (pfam08388), CpaD (COG5461), IstB_IS21_ATP (pfam08483), IstB_IS21 (pfam01695), COG4584 (Transposase ), INT_RitC_C_like (cd01182), DDE_Tnp_IS66 (pfam03050)
LomR (COG3637), PHA02518 (ParA-like protein; Provisional), COG5659 (SRSO17 transposase ), Rve (COG3316)