myRT

myRT report for GCA_000812665.2_ASM81266v2

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Seq: CP014327.1 Halocynthiibacter arcticus strain PAMC 20958, complete genome (4329554 bp)
Overview 1 RT 1: 1014304-1018306 bp 2 RT 2: 1521538-1524084 bp 3 RT 3: 3590020-3596986 bp 4 RT 4: 3886928-3893083 bp Neighborhood of RT #1 [1014304, 1018341] FAS1 PRK00222 RVT-UG2 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #2 [1521538, 1524500] RVT-UG2 COG5542 DPM1_like_bac Neighborhood of RT #3 [3590020, 3596997] YcjD RecQ Baculo_PEP_C RVT-Retrons PHA02517 InsE Neighborhood of RT #4 [3886928, 3893097] ErfK spoT_relA RVT-Retrons COG3415 BetA Feature: gene Location: 1014304-1014873 bp Ori: AML53532.1 Feature: domain Description: FAS1 Location: 1014388-1014871 bp Feature: domain Description: FAS1 Location: 1 01 4388-1 01 4871 bp Feature: gene Location: 1014944-1015450 bp Ori: AML50734.1 Feature: domain Description: PRK00222 Location: 1015028-1015415 bp Feature: domain Description: PRK00222 Location: 1 01 5028-1 01 541 5 bp Feature: gene Location: 1015524-1015904 bp Ori: AML50735.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1015605-1015866 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 01 5605-1 01 5866 bp Feature: gene Location: 1016362-1017933 bp Ori: AML50736.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1016506-1016722 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 01 6506-1 01 6722 bp Feature: domain Description: zf-IS66 Location: 1016746-1016872 bp Feature: domain Description: zf-IS66 Location: 1 01 6746-1 01 6872 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1016920-1017784 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 01 6920-1 01 7784 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1017805-1017919 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 01 7805-1 01 791 9 bp Feature: gene Location: 1017988-1018341 bp Ori: AML50737.1 Feature: domain Description: TnpB_IS66 Location: 1018015-1018306 bp Feature: domain Description: TnpB_IS66 Location: 1 01 801 5-1 01 8306 bp Feature: gene Location: 1521538-1521864 bp Ori: AML51128.1 Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1521550-1521826 bp Feature: RT Description: RVT-UG2 Note: UG2 RT Location: 1 521 550-1 521 826 bp Feature: gene Location: 1521899-1523116 bp Ori: AML51129.1 Feature: domain Description: COG5542 Location: 1521986-1522934 bp Feature: domain Description: COG5542 Location: 1 521 986-1 522934 bp Feature: gene Location: 1523493-1524500 bp Ori: AML51130.1 Feature: domain Description: DPM1_like_bac Location: 1523541-1524084 bp Feature: domain Description: DPM1 _like_bac Location: 1 523541 -1 524084 bp Feature: gene Location: 3590020-3593412 bp Ori: AML52830.1 Feature: domain Description: YcjD Location: 3590458-3590629 bp Feature: domain Description: YcjD Location: 3590458-3590629 bp Feature: domain Description: RecQ Location: 3591181-3592285 bp Feature: domain Description: RecQ Location: 3591 1 81 -3592285 bp Feature: gene Location: 3593420-3593914 bp Ori: AML52831.1 Feature: domain Description: Baculo_PEP_C Location: 3593639-3593894 bp Feature: domain Description: Baculo_PEP_C Location: 3593639-3593894 bp Feature: gene Location: 3594307-3595362 bp Ori: AML52832.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3594445-3594982 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3594445-3594982 bp Feature: gene Location: 3595762-3596674 bp Feature: domain Description: PHA02517 Location: 3595828-3596095 bp Feature: domain Description: PHA0251 7 Location: 3595828-3596095 bp Feature: gene Location: 3596671-3596997 bp Ori: AML52833.1 Feature: domain Description: InsE Location: 3596680-3596986 bp Feature: domain Description: InsE Location: 3596680-3596986 bp Feature: gene Location: 3886928-3887593 bp Ori: AML53078.1 Feature: domain Description: ErfK Location: 3887069-3887546 bp Feature: domain Description: ErfK Location: 3887069-3887546 bp Feature: gene Location: 3888171-3888491 bp Ori: AML53079.1 Feature: domain Description: spoT_relA Location: 3888189-3888405 bp Feature: domain Description: spoT_relA Location: 38881 89-3888405 bp Feature: gene Location: 3889327-3889851 bp Ori: AML53080.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3889333-3889615 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 3889333-388961 5 bp Feature: gene Location: 3889970-3891024 bp Feature: domain Description: COG3415 Location: 3890054-3890330 bp Feature: domain Description: COG341 5 Location: 3890054-3890330 bp Feature: gene Location: 3891481-3893097 bp Ori: AML53081.1 Feature: domain Description: BetA Location: 3891499-3893083 bp Feature: domain Description: BetA Location: 3891 499-3893083 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT FAS1 (smart00554), PRK00222 (peptide-methionine (R)-S-oxide reductase MsrB), RVT-UG2, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), TnpB_IS66 (pfam05717), COG5542 (Mannosyltransferase related to Gpi18 ), DPM1_like_bac (cd04187)
YcjD (COG2852), RecQ (COG0514), Baculo_PEP_C (pfam04513), RVT-Retrons, PHA02517 (putative transposase OrfB; Reviewed), InsE (COG2963), ErfK (COG1376), spoT_relA (TIGR00691), COG3415 (Transposase ), BetA (COG2303)