myRT

myRT report for GCA_000816465.4_ASM81646v4

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Seq: CP022433.1 Streptomyces pluripotens strain MUSC 137 chromosome, complete genome (7586568 bp)
Overview 1 RT 1: 24433-31387 bp 2 RT 2: 433052-437681 bp 3 RT 3: 1066552-1072551 bp 4 RT 4: 2153889-2157855 bp 5 RT 5: 3535429-3541709 bp 6 RT 6: 3767057-3776201 bp 7 RT 7: 4247384-4252470 bp 8 RT 8: 4490996-4495349 bp 9 RT 9: 5331949-5335483 bp 10 RT 10: 5346526-5350863 bp 11 RT 11: 5382157-5388107 bp 12 RT 12: 7506092-7508594 bp Neighborhood of RT #1 [24433, 32242] zf-ISL3 HTH_Tnp_ISL3 DDE_Tnp_ISL3 RVT-GII GIIM DDE_Tnp_1_assoc DDE_Tnp_1 InsE Neighborhood of RT #2 [433052, 438536] HipB Flavoprotein RVT-GII GIIM InsE Neighborhood of RT #3 [1066552, 1072607] InsE RVT-GII GIIM Imm21 DUF772 DDE_Tnp_1 DDE_Tnp_1_6 Neighborhood of RT #4 [2153889, 2158710] RVT-GII GIIM InsE Neighborhood of RT #5 [3535429, 3541747] DPBB_1 ChiA1_BD chitinase_GH19 RVT-GII GIIM COG3903 HTH_LUXR Neighborhood of RT #6 [3767057, 3776212] pfam13191 WD40 WD40 WD40 WD40 RVT-GII NERD MngR Neighborhood of RT #7 [4247384, 4253310] HTH_Tnp_1 DDE_Tnp_1 DDE_Tnp_1_6 RVT-GII GIIM InsE Neighborhood of RT #8 [4490996, 4495378] PHA02517 RVT-GII GIIM PRK09183 Neighborhood of RT #9 [5331949, 5336338] DUF4291 RVT-GII GIIM InsE Neighborhood of RT #10 [5346526, 5351986] InsE RVT-GII GIIM HTH_Tnp_1 Neighborhood of RT #11 [5382157, 5388107] InsE RVT-GII GIIM ABC_TM1139_LivF_branched ABC_TM1139_LivF_branched Neighborhood of RT #12 [7506092, 7508863] COG3293 COG3293 RVT-GII HTH_MerR-trunc Feature: gene Location: 24433-25563 bp Feature: gene Location: 25927-27228 bp Ori: ASN28083.1 Feature: domain Description: zf-ISL3 Location: 26026-26155 bp Feature: domain Description: zf-ISL3 Location: 26026-261 55 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 26185-26338 bp Feature: domain Description: HTH_Tnp_ISL3 Location: 261 85-26338 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 26458-27172 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 26458-271 72 bp Feature: gene Location: 27693-29129 bp Ori: ASN22699.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 28014-28701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2801 4-28701 bp Feature: domain Description: GIIM Note: maturase Location: 28776-29004 bp Feature: domain Description: GIIM Note: maturase Location: 28776-29004 bp Feature: gene Location: 29293-30363 bp Ori: ASN28084.1 Feature: domain Description: DDE_Tnp_1_assoc Location: 29299-29548 bp Feature: domain Description: DDE_Tnp_1 _assoc Location: 29299-29548 bp Feature: domain Description: DDE_Tnp_1 Location: 29581-30265 bp Feature: domain Description: DDE_Tnp_1 Location: 29581 -30265 bp Feature: gene Location: 31075-32242 bp Feature: domain Description: InsE Location: 31090-31387 bp Feature: domain Description: InsE Location: 31 090-31 387 bp Feature: gene Location: 433052-434236 bp Ori: ASN22963.1 Feature: domain Description: HipB Location: 433079-433337 bp Feature: domain Description: HipB Location: 433079-433337 bp Feature: gene Location: 434327-434902 bp Ori: ASN22964.1 Feature: domain Description: Flavoprotein Location: 434381-434807 bp Feature: domain Description: Flavoprotein Location: 434381 -434807 bp Feature: gene Location: 435335-436771 bp Ori: ASN22965.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435656-436343 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 435656-436343 bp Feature: domain Description: GIIM Note: maturase Location: 436418-436646 bp Feature: domain Description: GIIM Note: maturase Location: 43641 8-436646 bp Feature: gene Location: 436810-437053 bp Feature: gene Location: 437369-438536 bp Feature: domain Description: InsE Location: 437384-437681 bp Feature: domain Description: InsE Location: 437384-437681 bp Feature: gene Location: 1066552-1067719 bp Feature: domain Description: InsE Location: 1066567-1066864 bp Feature: domain Description: InsE Location: 1 066567-1 066864 bp Feature: gene Location: 1068035-1068278 bp Feature: gene Location: 1068317-1069753 bp Ori: ASN23410.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1068638-1069325 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 068638-1 069325 bp Feature: domain Description: GIIM Note: maturase Location: 1069400-1069628 bp Feature: domain Description: GIIM Note: maturase Location: 1 069400-1 069628 bp Feature: gene Location: 1070166-1070693 bp Ori: ASN23411.1 Feature: domain Description: Imm21 Location: 1070169-1070637 bp Feature: domain Description: Imm21 Location: 1 0701 69-1 070637 bp Feature: gene Location: 1071021-1072607 bp Ori: ASN23412.1 Feature: domain Description: DUF772 Location: 1071180-1071402 bp Feature: domain Description: DUF772 Location: 1 071 1 80-1 071 402 bp Feature: domain Description: DDE_Tnp_1 Location: 1071837-1072122 bp Feature: domain Description: DDE_Tnp_1 Location: 1 071 837-1 0721 22 bp Feature: domain Description: DDE_Tnp_1_6 Location: 1072200-1072551 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 1 072200-1 072551 bp Feature: gene Location: 2153889-2154143 bp Feature: gene Location: 2154476-2155027 bp Feature: gene Location: 2155509-2156945 bp Ori: ASN24232.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2155830-2156517 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 55830-21 5651 7 bp Feature: domain Description: GIIM Note: maturase Location: 2156592-2156820 bp Feature: domain Description: GIIM Note: maturase Location: 21 56592-21 56820 bp Feature: gene Location: 2156984-2157227 bp Feature: gene Location: 2157543-2158710 bp Feature: domain Description: InsE Location: 2157558-2157855 bp Feature: domain Description: InsE Location: 21 57558-21 57855 bp Feature: gene Location: 3535429-3535800 bp Ori: ASN28453.1 Feature: domain Description: DPBB_1 Location: 3535495-3535783 bp Feature: domain Description: DPBB_1 Location: 3535495-3535783 bp Feature: gene Location: 3535879-3536820 bp Ori: ASN25240.1 Feature: domain Description: ChiA1_BD Location: 3536020-3536140 bp Feature: domain Description: ChiA1 _BD Location: 3536020-35361 40 bp Feature: domain Description: chitinase_GH19 Location: 3536215-3536818 bp Feature: domain Description: chitinase_GH1 9 Location: 353621 5-353681 8 bp Feature: gene Location: 3537208-3538644 bp Ori: ASN25241.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3537529-3538216 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3537529-353821 6 bp Feature: domain Description: GIIM Note: maturase Location: 3538291-3538519 bp Feature: domain Description: GIIM Note: maturase Location: 3538291 -353851 9 bp Feature: gene Location: 3538683-3538926 bp Feature: gene Location: 3539336-3541747 bp Ori: ASN25242.1 Feature: domain Description: COG3903 Location: 3539543-3540770 bp Feature: domain Description: COG3903 Location: 3539543-3540770 bp Feature: domain Description: HTH_LUXR Location: 3541541-3541709 bp Feature: domain Description: HTH_LUXR Location: 3541 541 -3541 709 bp Feature: gene Location: 3767057-3767518 bp Feature: gene Location: 3768028-3772278 bp Ori: ASN25419.1 Feature: domain Description: pfam13191 Location: 3768490-3769132 bp Feature: domain Description: pfam1 31 91 Location: 3768490-37691 32 bp Feature: domain Description: WD40 Location: 3770257-3770962 bp Feature: domain Description: WD40 Location: 3770257-3770962 bp Feature: domain Description: WD40 Location: 3770995-3771091 bp Feature: domain Description: WD40 Location: 3770995-3771 091 bp Feature: domain Description: WD40 Location: 3771145-3771229 bp Feature: domain Description: WD40 Location: 3771 1 45-3771 229 bp Feature: domain Description: WD40 Location: 3771265-3772183 bp Feature: domain Description: WD40 Location: 3771 265-37721 83 bp Feature: gene Location: 3772649-3773328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3772754-3772877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3772754-3772877 bp Feature: gene Location: 3774923-3775453 bp Ori: ASN28475.1 Feature: domain Description: NERD Location: 3774980-3775283 bp Feature: domain Description: NERD Location: 3774980-3775283 bp Feature: gene Location: 3775454-3776212 bp Ori: ASN25420.1 Feature: domain Description: MngR Location: 3775472-3776201 bp Feature: domain Description: MngR Location: 3775472-3776201 bp Feature: gene Location: 4247384-4248792 bp Feature: domain Description: HTH_Tnp_1 Location: 4247432-4247669 bp Feature: domain Description: HTH_Tnp_1 Location: 4247432-4247669 bp Feature: gene Location: 4248829-4249845 bp Feature: domain Description: DDE_Tnp_1 Location: 4249075-4249360 bp Feature: domain Description: DDE_Tnp_1 Location: 4249075-4249360 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4249438-4249789 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 4249438-4249789 bp Feature: gene Location: 4250109-4251545 bp Ori: ASN25779.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250430-4251117 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4250430-4251 1 1 7 bp Feature: domain Description: GIIM Note: maturase Location: 4251192-4251420 bp Feature: domain Description: GIIM Note: maturase Location: 4251 1 92-4251 420 bp Feature: gene Location: 4251584-4251827 bp Feature: gene Location: 4252143-4253310 bp Feature: domain Description: InsE Location: 4252158-4252470 bp Feature: domain Description: InsE Location: 42521 58-4252470 bp Feature: gene Location: 4490996-4491979 bp Ori: ASN25960.1 Feature: domain Description: PHA02517 Location: 4491164-4491941 bp Feature: domain Description: PHA0251 7 Location: 4491 1 64-4491 941 bp Feature: gene Location: 4492243-4492486 bp Feature: gene Location: 4492525-4493961 bp Ori: ASN25961.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4492846-4493533 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4492846-4493533 bp Feature: domain Description: GIIM Note: maturase Location: 4493608-4493836 bp Feature: domain Description: GIIM Note: maturase Location: 4493608-4493836 bp Feature: gene Location: 4494330-4494593 bp Feature: gene Location: 4494590-4495378 bp Ori: ASN25963.1 Feature: domain Description: PRK09183 Location: 4494641-4495349 bp Feature: domain Description: PRK091 83 Location: 4494641 -4495349 bp Feature: gene Location: 5331949-5332328 bp Feature: gene Location: 5332431-5332907 bp Ori: ASN26567.1 Feature: domain Description: DUF4291 Location: 5332461-5332869 bp Feature: domain Description: DUF4291 Location: 5332461 -5332869 bp Feature: gene Location: 5333137-5334573 bp Ori: ASN26568.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5333458-5334145 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5333458-53341 45 bp Feature: domain Description: GIIM Note: maturase Location: 5334220-5334448 bp Feature: domain Description: GIIM Note: maturase Location: 5334220-5334448 bp Feature: gene Location: 5334612-5334855 bp Feature: gene Location: 5335171-5336338 bp Feature: domain Description: InsE Location: 5335186-5335483 bp Feature: domain Description: InsE Location: 53351 86-5335483 bp Feature: gene Location: 5346526-5347673 bp Feature: domain Description: InsE Location: 5346541-5346838 bp Feature: domain Description: InsE Location: 5346541 -5346838 bp Feature: gene Location: 5348009-5348252 bp Feature: gene Location: 5348291-5349727 bp Ori: ASN26579.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5348612-5349299 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 534861 2-5349299 bp Feature: domain Description: GIIM Note: maturase Location: 5349374-5349602 bp Feature: domain Description: GIIM Note: maturase Location: 5349374-5349602 bp Feature: gene Location: 5349942-5350385 bp Feature: gene Location: 5350578-5351986 bp Feature: domain Description: HTH_Tnp_1 Location: 5350626-5350863 bp Feature: domain Description: HTH_Tnp_1 Location: 5350626-5350863 bp Feature: gene Location: 5382157-5383304 bp Feature: domain Description: InsE Location: 5382172-5382469 bp Feature: domain Description: InsE Location: 53821 72-5382469 bp Feature: gene Location: 5383640-5383883 bp Feature: gene Location: 5383922-5385358 bp Ori: ASN26600.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5384243-5384930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5384243-5384930 bp Feature: domain Description: GIIM Note: maturase Location: 5385005-5385233 bp Feature: domain Description: GIIM Note: maturase Location: 5385005-5385233 bp Feature: gene Location: 5385611-5387431 bp Ori: ASN26601.1 Feature: domain Description: ABC_TM1139_LivF_branched Location: 5386478-5386580 bp Feature: domain Description: ABC_TM1 1 39_LivF_branched Location: 5386478-5386580 bp Feature: domain Description: ABC_TM1139_LivF_branched Location: 5387207-5387330 bp Feature: domain Description: ABC_TM1 1 39_LivF_branched Location: 5387207-5387330 bp Feature: gene Location: 5387457-5388107 bp Feature: gene Location: 7506092-7506988 bp Ori: ASN28033.1 Feature: domain Description: COG3293 Location: 7506185-7506530 bp Feature: domain Description: COG3293 Location: 75061 85-7506530 bp Feature: domain Description: COG3293 Location: 7506578-7506956 bp Feature: domain Description: COG3293 Location: 7506578-7506956 bp Feature: gene Location: 7506945-7507481 bp Feature: gene Location: 7507541-7507975 bp Ori: ASN28035.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7507595-7507733 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7507595-7507733 bp Feature: gene Location: 7508005-7508232 bp Feature: gene Location: 7508276-7508863 bp Feature: domain Description: HTH_MerR-trunc Location: 7508516-7508594 bp Feature: domain Description: HTH_MerR-trunc Location: 750851 6-7508594 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT zf-ISL3 (pfam14690), HTH_Tnp_ISL3 (pfam13542), DDE_Tnp_ISL3 (pfam01610), RVT-GII, GIIM (pfam08388), DDE_Tnp_1_assoc (pfam13808), DDE_Tnp_1 (pfam01609), InsE (COG2963), HipB (COG1396), Flavoprotein (pfam02441)
Imm21 (pfam15589), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751), DPBB_1 (smart00837), ChiA1_BD (cd12214), chitinase_GH19 (cd00325), COG3903 (Predicted ATPase ), HTH_LUXR (smart00421), pfam13191 (AAA_16;AAA ATPase domain), WD40 (smart00320)
NERD (pfam08378), MngR (COG2188), HTH_Tnp_1 (pfam01527), PHA02517 (putative transposase OrfB; Reviewed), PRK09183 (transposase/IS protein; Provisional), DUF4291 (pfam14124), ABC_TM1139_LivF_branched (cd03224), COG3293 (Transposase ), HTH_MerR-trunc (cd04762)