myRT

myRT report for GCA_000816985.1_ASM81698v1

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Seq: CP007399.1 Pseudomonas aeruginosa strain F22031, complete genome (6603099 bp)
Overview 1 RT 1: 730186-736881 bp 2 RT 2: 2682512-2687450 bp 3 RT 3: 3614324-3622321 bp Neighborhood of RT #1 [730186, 736907] PRK09692 DDE_Tnp_1 RVT-GII TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Neighborhood of RT #2 [2682512, 2687473] FadR GntR RVT-GII Aegerolysin LysR Neighborhood of RT #3 [3614324, 3622338] ABC_phnC DUF772 RVT-GII GIIM CHD CHD COG4271 Feature: gene Location: 730186-731472 bp Ori: AJD59676.1 Feature: domain Description: PRK09692 Location: 730207-731410 bp Feature: domain Description: PRK09692 Location: 730207-731 41 0 bp Feature: gene Location: 732321-733070 bp Ori: AJD59677.1 Feature: domain Description: DDE_Tnp_1 Location: 732591-733029 bp Feature: domain Description: DDE_Tnp_1 Location: 732591 -733029 bp Feature: gene Location: 733027-734292 bp Ori: AJD59678.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733231-733921 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 733231 -733921 bp Feature: gene Location: 734942-735301 bp Ori: AJD59679.1 Feature: domain Description: TnpB_IS66 Location: 734972-735266 bp Feature: domain Description: TnpB_IS66 Location: 734972-735266 bp Feature: gene Location: 735321-736907 bp Ori: AJD59680.1 Feature: domain Description: LZ_Tnp_IS66 Location: 735426-735693 bp Feature: domain Description: LZ_Tnp_IS66 Location: 735426-735693 bp Feature: domain Description: zf-IS66 Location: 735723-735846 bp Feature: domain Description: zf-IS66 Location: 735723-735846 bp Feature: domain Description: DDE_Tnp_IS66 Location: 735891-736746 bp Feature: domain Description: DDE_Tnp_IS66 Location: 735891 -736746 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 736767-736881 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 736767-736881 bp Feature: gene Location: 2682512-2683198 bp Ori: AJD61420.1 Feature: domain Description: FadR Location: 2682524-2683175 bp Feature: domain Description: FadR Location: 2682524-26831 75 bp Feature: gene Location: 2683299-2683925 bp Ori: AJD61421.1 Feature: domain Description: GntR Location: 2683329-2683920 bp Feature: domain Description: GntR Location: 2683329-2683920 bp Feature: gene Location: 2684491-2685756 bp Ori: AJD61422.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684695-2685385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684695-2685385 bp Feature: gene Location: 2686123-2686533 bp Ori: AJD61423.1 Feature: domain Description: Aegerolysin Location: 2686135-2686525 bp Feature: domain Description: Aegerolysin Location: 26861 35-2686525 bp Feature: gene Location: 2686565-2687473 bp Ori: AJD61424.1 Feature: domain Description: LysR Location: 2686577-2687450 bp Feature: domain Description: LysR Location: 2686577-2687450 bp Feature: gene Location: 3614324-3615151 bp Ori: AJD62297.1 Feature: domain Description: ABC_phnC Location: 3614354-3615068 bp Feature: domain Description: ABC_phnC Location: 361 4354-361 5068 bp Feature: gene Location: 3615494-3616135 bp Ori: AJD62298.1 Feature: domain Description: DUF772 Location: 3615644-3615839 bp Feature: domain Description: DUF772 Location: 361 5644-361 5839 bp Feature: gene Location: 3616524-3617792 bp Ori: AJD62299.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3616737-3617394 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 361 6737-361 7394 bp Feature: domain Description: GIIM Note: maturase Location: 3617472-3617694 bp Feature: domain Description: GIIM Note: maturase Location: 361 7472-361 7694 bp Feature: gene Location: 3619787-3621331 bp Ori: AJD62300.1 Feature: domain Description: CHD Location: 3620003-3620417 bp Feature: domain Description: CHD Location: 3620003-362041 7 bp Feature: domain Description: CHD Location: 3620645-3621134 bp Feature: domain Description: CHD Location: 3620645-3621 1 34 bp Feature: gene Location: 3621412-3622338 bp Ori: AJD62301.1 Feature: domain Description: COG4271 Location: 3621652-3622321 bp Feature: domain Description: COG4271 Location: 3621 652-3622321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09692 (Integrase; provisional), DDE_Tnp_1 (pfam01609), RVT-GII, TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), FadR (COG2186), GntR (pfam00392)
Aegerolysin (pfam06355), LysR (COG0583), ABC_phnC (TIGR02315), DUF772 (pfam05598), GIIM (pfam08388), CHD (cd07302), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain )