myRT

myRT report for GCA_000817005.1_ASM81700v1

Download annotations/find similar RTs

Seq: CP007593.1 Streptococcus pneumoniae strain NT_110_58, complete genome (2287774 bp)
Overview 1 RT 1: 612746-622030 bp 2 RT 2: 989636-997674 bp 3 RT 3: 1171639-1178889 bp 4 RT 4: 1364671-1373409 bp Neighborhood of RT #1 [612746, 622185] TraC-F-type Peptidase_M23 Phage_lysozyme2 COG3942 RVT-GII cas_Csn1 AbiEii COG5340 Neighborhood of RT #2 [989636, 997757] TraC-F-type Phage_lysozyme2 PRK08581 RVT-GII cas_Csn1 InsE HTH_21 Neighborhood of RT #3 [1171639, 1178894] AceF lipoamide_DH Lip_prot_lig_C RVT-GII RVT-GII GIIM xerS EriC TrkA_C Neighborhood of RT #4 [1364671, 1373561] DUF4315 DUF2140 RVT-GII cas_Csn1 Peptidase_M23 Phage_lysozyme2 PRK08581 VirB4_CagE TraC-F-type Feature: gene Location: 612746-615097 bp Ori: AJD71537.1 Feature: domain Description: TraC-F-type Location: 613532-614915 bp Feature: domain Description: TraC-F-type Location: 61 3532-61 491 5 bp Feature: gene Location: 615094-617772 bp Ori: AJD71538.1 Feature: domain Description: Peptidase_M23 Location: 616540-616744 bp Feature: domain Description: Peptidase_M23 Location: 61 6540-61 6744 bp Feature: domain Description: Phage_lysozyme2 Location: 616897-617407 bp Feature: domain Description: Phage_lysozyme2 Location: 61 6897-61 7407 bp Feature: domain Description: COG3942 Location: 617485-617755 bp Feature: domain Description: COG3942 Location: 61 7485-61 7755 bp Feature: gene Location: 618481-620403 bp Ori: AJD71539.1 Gene: ltrA_1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 618808-619543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 61 8808-61 9543 bp Feature: domain Description: cas_Csn1 Location: 619954-620233 bp Feature: domain Description: cas_Csn1 Location: 61 9954-620233 bp Feature: gene Location: 620753-621598 bp Ori: AJD71540.1 Feature: domain Description: AbiEii Location: 620852-621551 bp Feature: domain Description: AbiEii Location: 620852-621 551 bp Feature: gene Location: 621595-622185 bp Ori: AJD71541.1 Feature: domain Description: COG5340 Location: 621598-622030 bp Feature: domain Description: COG5340 Location: 621 598-622030 bp Feature: gene Location: 989636-991204 bp Ori: AJD71898.1 Feature: domain Description: TraC-F-type Location: 989795-991031 bp Feature: domain Description: TraC-F-type Location: 989795-991 031 bp Feature: gene Location: 991216-993921 bp Ori: AJD71899.1 Feature: domain Description: Phage_lysozyme2 Location: 993025-993538 bp Feature: domain Description: Phage_lysozyme2 Location: 993025-993538 bp Feature: domain Description: PRK08581 Location: 993655-993904 bp Feature: domain Description: PRK08581 Location: 993655-993904 bp Feature: gene Location: 994630-996552 bp Ori: AJD71900.1 Gene: ltrA_2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994957-995692 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 994957-995692 bp Feature: domain Description: cas_Csn1 Location: 996103-996382 bp Feature: domain Description: cas_Csn1 Location: 9961 03-996382 bp Feature: gene Location: 997000-997425 bp Ori: AJD71901.1 Feature: domain Description: InsE Location: 997045-997354 bp Feature: domain Description: InsE Location: 997045-997354 bp Feature: gene Location: 997401-997757 bp Ori: AJD71902.1 Feature: domain Description: HTH_21 Location: 997506-997674 bp Feature: domain Description: HTH_21 Location: 997506-997674 bp Feature: gene Location: 1171639-1173342 bp Ori: AJD72090.1 Feature: domain Description: AceF Location: 1171642-1171939 bp Feature: domain Description: AceF Location: 1 1 71 642-1 1 71 939 bp Feature: domain Description: lipoamide_DH Location: 1171975-1173325 bp Feature: domain Description: lipoamide_DH Location: 1 1 71 975-1 1 73325 bp Feature: gene Location: 1173413-1173766 bp Ori: AJD72091.1 Gene: lplJ Feature: domain Description: Lip_prot_lig_C Location: 1173506-1173752 bp Feature: domain Description: Lip_prot_lig_C Location: 1 1 73506-1 1 73752 bp Feature: gene Location: 1173931-1174989 bp Ori: AJD72092.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174135-1174297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 741 35-1 1 74297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1174303-1174630 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 74303-1 1 74630 bp Feature: domain Description: GIIM Note: maturase Location: 1174684-1174897 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 74684-1 1 74897 bp Feature: gene Location: 1175690-1176760 bp Ori: AJD72093.1 Gene: xerS Feature: domain Description: xerS Location: 1175693-1176758 bp Feature: domain Description: xerS Location: 1 1 75693-1 1 76758 bp Feature: gene Location: 1177344-1178894 bp Ori: AJD72094.1 Gene: clcA Feature: domain Description: EriC Location: 1177437-1178649 bp Feature: domain Description: EriC Location: 1 1 77437-1 1 78649 bp Feature: domain Description: TrkA_C Location: 1178694-1178889 bp Feature: domain Description: TrkA_C Location: 1 1 78694-1 1 78889 bp Feature: gene Location: 1364671-1364910 bp Ori: AJD72266.1 Feature: domain Description: DUF4315 Location: 1364704-1364884 bp Feature: domain Description: DUF431 5 Location: 1 364704-1 364884 bp Feature: gene Location: 1364921-1365601 bp Ori: AJD72267.1 Feature: domain Description: DUF2140 Location: 1364954-1365203 bp Feature: domain Description: DUF21 40 Location: 1 364954-1 365203 bp Feature: gene Location: 1365869-1367791 bp Ori: AJD72268.1 Gene: ltrA_4 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1366196-1366931 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 3661 96-1 366931 bp Feature: domain Description: cas_Csn1 Location: 1367342-1367621 bp Feature: domain Description: cas_Csn1 Location: 1 367342-1 367621 bp Feature: gene Location: 1368500-1371187 bp Ori: AJD72269.1 Feature: domain Description: Peptidase_M23 Location: 1369913-1370117 bp Feature: domain Description: Peptidase_M23 Location: 1 36991 3-1 3701 1 7 bp Feature: domain Description: Phage_lysozyme2 Location: 1370288-1370828 bp Feature: domain Description: Phage_lysozyme2 Location: 1 370288-1 370828 bp Feature: domain Description: PRK08581 Location: 1370954-1371170 bp Feature: domain Description: PRK08581 Location: 1 370954-1 371 1 70 bp Feature: gene Location: 1371198-1373561 bp Ori: AJD72270.1 Feature: domain Description: VirB4_CagE Location: 1371279-1371723 bp Feature: domain Description: VirB4_CagE Location: 1 371 279-1 371 723 bp Feature: domain Description: TraC-F-type Location: 1372161-1373409 bp Feature: domain Description: TraC-F-type Location: 1 3721 61 -1 373409 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TraC-F-type (TIGR02746), Peptidase_M23 (pfam01551), Phage_lysozyme2 (pfam18013), COG3942 (Surface antigen ), RVT-GII, cas_Csn1 (TIGR01865), AbiEii (pfam08843), COG5340 (Transcriptional regulator, predicted component of viral defense system ), PRK08581 (amidase domain-containing protein), InsE (COG2963)
HTH_21 (pfam13276), AceF (COG0508), lipoamide_DH (TIGR01350), Lip_prot_lig_C (pfam10437), GIIM (pfam08388), xerS (PRK05084), EriC (cd01031), TrkA_C (pfam02080), DUF4315 (pfam14193), DUF2140 (pfam09911)
VirB4_CagE (TIGR00929)