myRT

myRT report for GCA_000818015.1_ASM81801v1

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Seq: CP007511.1 Pseudomonas balearica DSM 6083, complete genome (4383480 bp)
Overview 1 RT 1: 690073-696883 bp 2 RT 2: 1707001-1715077 bp 3 RT 3: 2266428-2273546 bp Neighborhood of RT #1 [690073, 697080] ABC_phnC DUF772 RVT-GII GIIM CHD CHD Neighborhood of RT #2 [1707001, 1715085] PRK01766 PRK00257 RVT_N RVT-GII YkfC HNHc PRK07994 PRK00153 Neighborhood of RT #3 [2266428, 2273617] InsE PHA02517 RVT-GII GIIM IS5 Viral_helicase1 Viral_helicase1 Viral_helicase1 Feature: gene Location: 690073-690900 bp Ori: AJE14080.1 Feature: domain Description: ABC_phnC Location: 690103-690817 bp Feature: domain Description: ABC_phnC Location: 6901 03-69081 7 bp Feature: gene Location: 691243-691884 bp Ori: AJE14081.1 Feature: domain Description: DUF772 Location: 691393-691588 bp Feature: domain Description: DUF772 Location: 691 393-691 588 bp Feature: gene Location: 692273-693541 bp Ori: AJE14082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692486-693143 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 692486-6931 43 bp Feature: domain Description: GIIM Note: maturase Location: 693221-693443 bp Feature: domain Description: GIIM Note: maturase Location: 693221 -693443 bp Feature: gene Location: 694273-694452 bp Feature: gene Location: 695536-697080 bp Ori: AJE14084.1 Feature: domain Description: CHD Location: 695752-696166 bp Feature: domain Description: CHD Location: 695752-6961 66 bp Feature: domain Description: CHD Location: 696394-696883 bp Feature: domain Description: CHD Location: 696394-696883 bp Feature: gene Location: 1707001-1708410 bp Ori: AJE14993.1 Feature: domain Description: PRK01766 Location: 1707019-1708360 bp Feature: domain Description: PRK01 766 Location: 1 70701 9-1 708360 bp Feature: gene Location: 1708518-1709693 bp Ori: AJE14994.1 Feature: domain Description: PRK00257 Location: 1708521-1709655 bp Feature: domain Description: PRK00257 Location: 1 708521 -1 709655 bp Feature: gene Location: 1710820-1712559 bp Ori: AJE14995.1 Feature: domain Description: RVT_N Location: 1710880-1711123 bp Feature: domain Description: RVT_N Location: 1 71 0880-1 71 1 1 23 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1711171-1711822 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 71 1 1 71 -1 71 1 822 bp Feature: domain Description: YkfC Location: 1711987-1712185 bp Feature: domain Description: YkfC Location: 1 71 1 987-1 71 21 85 bp Feature: domain Description: HNHc Note: nucleases Location: 1712356-1712512 bp Feature: domain Description: HNHc Note: nucleases Location: 1 71 2356-1 71 251 2 bp Feature: gene Location: 1712710-1714749 bp Ori: AJE14996.1 Feature: domain Description: PRK07994 Location: 1712713-1714723 bp Feature: domain Description: PRK07994 Location: 1 71 271 3-1 71 4723 bp Feature: gene Location: 1714759-1715085 bp Ori: AJE14997.1 Feature: domain Description: PRK00153 Location: 1714765-1715077 bp Feature: domain Description: PRK001 53 Location: 1 71 4765-1 71 5077 bp Feature: gene Location: 2266428-2266724 bp Ori: AJE15435.1 Feature: domain Description: InsE Location: 2266437-2266707 bp Feature: domain Description: InsE Location: 2266437-2266707 bp Feature: gene Location: 2266721-2267581 bp Ori: AJE15436.1 Feature: domain Description: PHA02517 Location: 2266775-2267519 bp Feature: domain Description: PHA0251 7 Location: 2266775-226751 9 bp Feature: gene Location: 2269305-2270573 bp Ori: AJE15437.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2269518-2270175 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 226951 8-22701 75 bp Feature: domain Description: GIIM Note: maturase Location: 2270253-2270475 bp Feature: domain Description: GIIM Note: maturase Location: 2270253-2270475 bp Feature: gene Location: 2271066-2271350 bp Ori: AJE17379.1 Feature: domain Description: IS5 Location: 2271075-2271327 bp Feature: domain Description: IS5 Location: 2271 075-2271 327 bp Feature: gene Location: 2272103-2273617 bp Ori: AJE15438.1 Feature: domain Description: Viral_helicase1 Location: 2272196-2272253 bp Feature: domain Description: Viral_helicase1 Location: 22721 96-2272253 bp Feature: domain Description: Viral_helicase1 Location: 2272715-2272847 bp Feature: domain Description: Viral_helicase1 Location: 227271 5-2272847 bp Feature: domain Description: Viral_helicase1 Location: 2273390-2273546 bp Feature: domain Description: Viral_helicase1 Location: 2273390-2273546 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT ABC_phnC (TIGR02315), DUF772 (pfam05598), RVT-GII, GIIM (pfam08388), CHD (cd07302), PRK01766 (multidrug efflux protein; Reviewed), PRK00257 (4-phosphoerythronate dehydrogenase PdxB), RVT_N (pfam13655), YkfC (COG3344), HNHc (smart00507)
PRK07994 (DNA polymerase III subunits gamma and tau; Validated), PRK00153 (YbaB/EbfC family nucleoid-associated protein), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed), IS5 (COG3039), Viral_helicase1 (pfam01443)