myRT

myRT report for GCA_000821185.2_ASM82118v2

Download annotations/find similar RTs

Seq: CP050857.1 Serratia symbiotica strain CWBI-2.3 plasmid pSsAf2.3-2, complete sequence (116749 bp)
Overview 1 RT 1: 62597-71588 bp Neighborhood of RT #1 [62597, 71605] PinE DUF4158 DDE_Tnp_Tn3 RVT-GII GIIM PRK15223 PRK15224 Feature: gene Location: 62597-63211 bp Ori: QLH64557.1 Feature: domain Description: PinE Location: 62600-63161 bp Feature: domain Description: PinE Location: 62600-631 61 bp Feature: gene Location: 63371-66400 bp Ori: QLH64558.1 Feature: domain Description: DUF4158 Location: 63401-63887 bp Feature: domain Description: DUF41 58 Location: 63401 -63887 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 65159-66335 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 651 59-66335 bp Feature: gene Location: 66964-68226 bp Ori: QLH64559.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 67168-67825 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 671 68-67825 bp Feature: domain Description: GIIM Note: maturase Location: 67906-68110 bp Feature: domain Description: GIIM Note: maturase Location: 67906-681 1 0 bp Feature: gene Location: 68336-70840 bp Ori: QLH64560.1 Feature: domain Description: PRK15223 Location: 68360-70838 bp Feature: domain Description: PRK1 5223 Location: 68360-70838 bp Feature: gene Location: 70853-71605 bp Ori: QLH64596.1 Feature: domain Description: PRK15224 Location: 70871-71588 bp Feature: domain Description: PRK1 5224 Location: 70871 -71 588 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PinE (COG1961), DUF4158 (pfam13700), DDE_Tnp_Tn3 (pfam01526), RVT-GII, GIIM (pfam08388), PRK15223 (fimbrial biogenesis outer membrane usher protein), PRK15224 (pili assembly chaperone PapD)

Seq: CP050856.1 Serratia symbiotica strain CWBI-2.3 plasmid pSsAf2.3-1, complete sequence (82638 bp)
Overview 1 RT 1: 71194-81012 bp Neighborhood of RT #1 [71194, 81794] HTH_29 rve PRK15370 PRK15370 RVT-GII GIIM RVT-GII GIIM PRK15370 NEL Feature: gene Location: 71194-72234 bp Ori: QLH64488.1 Feature: domain Description: HTH_29 Location: 71227-71413 bp Feature: domain Description: HTH_2 9 Location: 712 2 7-71413 bp Feature: domain Description: rve Location: 71677-72043 bp Feature: domain Description: rve Location: 71677-72 043 bp Feature: gene Location: 72451-74928 bp Ori: QLH64489.1 Feature: domain Description: PRK15370 Location: 72493-73039 bp Feature: domain Description: PRK15370 Location: 72 493-73039 bp Feature: domain Description: PRK15370 Location: 73066-74032 bp Feature: domain Description: PRK15370 Location: 73066-74032 bp Feature: gene Location: 75621-76883 bp Ori: QLH64490.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 75825-76482 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 7582 5-76482 bp Feature: domain Description: GIIM Note: maturase Location: 76563-76767 bp Feature: domain Description: GIIM Note: maturase Location: 76563-76767 bp Feature: gene Location: 78150-79412 bp Ori: QLH64491.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78354-79011 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 78354-79011 bp Feature: domain Description: GIIM Note: maturase Location: 79092-79296 bp Feature: domain Description: GIIM Note: maturase Location: 79092 -792 96 bp Feature: gene Location: 79623-81794 bp Ori: QLH64492.1 Feature: domain Description: PRK15370 Location: 79665-80214 bp Feature: domain Description: PRK15370 Location: 79665-802 14 bp Feature: domain Description: NEL Location: 80418-81012 bp Feature: domain Description: NEL Location: 80418-81012 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HTH_29 (pfam13551), rve (pfam00665), PRK15370 (type III secretion system effector E3 ubiquitin transferase SlrP), RVT-GII, GIIM (pfam08388), NEL (pfam14496)

Seq: CP050855.1 Serratia symbiotica strain CWBI-2.3 chromosome, complete genome (3351526 bp)
Overview 1 RT 1: 222418-226466 bp 2 RT 2: 292152-296417 bp 3 RT 3: 842698-846895 bp 4 RT 4: 2412445-2416712 bp 5 RT 5: 2678387-2687565 bp Neighborhood of RT #1 [222418, 226471] PRK10963 DapF RVT-GII GIIM YifL cyaY Neighborhood of RT #2 [292152, 296449] HemS Inhibitor_I42 RVT-GII GIIM COG3547 PRK10044 Neighborhood of RT #3 [842698, 846895] COG3547 DDE_Tnp_Tn3 RVT-GII GIIM InsE Neighborhood of RT #4 [2412445, 2416720] PRK11106 RVT-GII GIIM PRK11106 TIGR00426 Neighborhood of RT #5 [2678387, 2687570] relA PRK11107 RVT-GII GIIM InsE RVT-GII PRK11107 HTH_Tnp_1 Feature: gene Location: 222418-223122 bp Ori: QLH61826.1 Feature: domain Description: PRK10963 Location: 222457-223117 bp Feature: domain Description: PRK10963 Location: 222457-223 117 bp Feature: gene Location: 223119-223943 bp Ori: QLH61827.1 Gene: dapF Feature: domain Description: DapF Location: 223122-223938 bp Feature: domain Description: DapF Location: 223 122-223 93 8 bp Feature: gene Location: 224572-225834 bp Ori: QLH61828.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224776-225433 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 224776-22543 3 bp Feature: domain Description: GIIM Note: maturase Location: 225514-225718 bp Feature: domain Description: GIIM Note: maturase Location: 225514-225718 bp Feature: gene Location: 225845-226078 bp Ori: QLH64230.1 Feature: domain Description: YifL Location: 225854-226019 bp Feature: domain Description: YifL Location: 225854-226019 bp Feature: gene Location: 226151-226471 bp Ori: QLH61829.1 Gene: cyaY Feature: domain Description: cyaY Location: 226154-226466 bp Feature: domain Description: cyaY Location: 226154-226466 bp Feature: gene Location: 292152-293180 bp Ori: QLH61870.1 Feature: domain Description: HemS Location: 292161-293172 bp Feature: domain Description: HemS Location: 292161-293 172 bp Feature: gene Location: 293247-293729 bp Ori: QLH61871.1 Feature: domain Description: Inhibitor_I42 Location: 293457-293685 bp Feature: domain Description: Inhibitor_I42 Location: 293 457-293 685 bp Feature: gene Location: 293840-295102 bp Ori: QLH61872.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294044-294701 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 294044-294701 bp Feature: domain Description: GIIM Note: maturase Location: 294782-294986 bp Feature: domain Description: GIIM Note: maturase Location: 294782-294986 bp Feature: gene Location: 295984-296253 bp Feature: domain Description: COG3547 Location: 295987-296221 bp Feature: domain Description: COG3 547 Location: 295987-296221 bp Feature: gene Location: 296234-296449 bp Ori: QLH61873.1 Feature: domain Description: PRK10044 Location: 296237-296417 bp Feature: domain Description: PRK10044 Location: 29623 7-296417 bp Feature: gene Location: 842698-843720 bp Ori: QLH62337.1 Feature: domain Description: COG3547 Location: 842713-843679 bp Feature: domain Description: COG3 547 Location: 842713 -843 679 bp Feature: gene Location: 843805-844978 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 843811-844888 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 843 811-844888 bp Feature: gene Location: 845222-845653 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 845225-845399 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 845225-8453 99 bp Feature: domain Description: GIIM Note: maturase Location: 845480-845648 bp Feature: domain Description: GIIM Note: maturase Location: 845480-845648 bp Feature: gene Location: 845727-845976 bp Ori: QLH62338.1 Feature: domain Description: InsE Location: 845736-845976 bp Feature: domain Description: InsE Location: 84573 6-845976 bp Feature: gene Location: 845976-846895 bp Feature: gene Location: 2412445-2412720 bp Feature: gene Location: 2413182-2413427 bp Feature: domain Description: PRK11106 Location: 2413185-2413428 bp Feature: domain Description: PRK11106 Location: 2413 185-2413 428 bp Feature: gene Location: 2413971-2415233 bp Ori: QLH63542.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2414175-2414832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2414175-241483 2 bp Feature: domain Description: GIIM Note: maturase Location: 2414913-2415117 bp Feature: domain Description: GIIM Note: maturase Location: 2414913 -2415117 bp Feature: gene Location: 2415297-2415743 bp Gene: queC Feature: domain Description: PRK11106 Location: 2415309-2415738 bp Feature: domain Description: PRK11106 Location: 24153 09-241573 8 bp Feature: gene Location: 2416352-2416720 bp Ori: QLH63543.1 Feature: domain Description: TIGR00426 Location: 2416529-2416712 bp Feature: domain Description: TIGR00426 Location: 2416529-2416712 bp Feature: gene Location: 2678387-2680618 bp Ori: QLH63745.1 Gene: relA Feature: domain Description: relA Location: 2678390-2680613 bp Feature: domain Description: relA Location: 26783 90-2680613 bp Feature: gene Location: 2681540-2682598 bp Feature: domain Description: PRK11107 Location: 2681543-2682596 bp Feature: domain Description: PRK11107 Location: 2681543 -2682596 bp Feature: gene Location: 2682801-2683538 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2682807-2683284 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2682807-2683 284 bp Feature: domain Description: GIIM Note: maturase Location: 2683365-2683533 bp Feature: domain Description: GIIM Note: maturase Location: 2683 3 65-2683 53 3 bp Feature: gene Location: 2684464-2684713 bp Ori: QLH63746.1 Feature: domain Description: InsE Location: 2684473-2684713 bp Feature: domain Description: InsE Location: 2684473 -2684713 bp Feature: gene Location: 2683545-2684464 bp Feature: gene Location: 2684770-2685168 bp Ori: QLH63747.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684974-2685154 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2684974-2685154 bp Feature: gene Location: 2685708-2687384 bp Feature: domain Description: PRK11107 Location: 2685711-2687361 bp Feature: domain Description: PRK11107 Location: 2685711-26873 61 bp Feature: gene Location: 2687451-2687570 bp Feature: domain Description: HTH_Tnp_1 Location: 2687472-2687565 bp Feature: domain Description: HTH_Tnp_1 Location: 2687472-2687565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10963 (hypothetical protein; Provisional), DapF (TIGR00652), RVT-GII, GIIM (pfam08388), YifL (COG5567), cyaY (PRK01379), HemS (pfam05171), Inhibitor_I42 (pfam09394), COG3547 (Transposase ), PRK10044 (ferrichrome outer membrane transporter; Provisional)
DDE_Tnp_Tn3 (pfam01526), InsE (COG2963), PRK11106 (queuosine biosynthesis protein QueC; Provisional), TIGR00426 (competence protein ComEA helix-hairpin-helix repeat region), relA (PRK10872), PRK11107 (hybrid sensory histidine kinase BarA; Provisional), HTH_Tnp_1 (pfam01527)