myRT

myRT report for GCA_000827125.1_ASM82712v1

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Seq: CP010311.1 Geoalkalibacter subterraneus strain Red1, complete genome (3475523 bp)
Overview 1 RT 1: 3396197-3402016 bp Neighborhood of RT #1 [3396197, 3402477] PRK08673 PRK14501 RVT-DGRs Avd_like YfmG Feature: gene Location: 3396197-3397216 bp Ori: AJF07749.1 Feature: domain Description: PRK08673 Location: 3396203-3397208 bp Feature: domain Description: PRK08673 Location: 3396203-3397208 bp Feature: gene Location: 3397710-3399128 bp Ori: AJF07750.1 Feature: domain Description: PRK14501 Location: 3397734-3399126 bp Feature: domain Description: PRK1 4501 Location: 3397734-33991 26 bp Feature: gene Location: 3399674-3400717 bp Ori: AJF07751.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3399887-3400586 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 3399887-3400586 bp Feature: gene Location: 3400998-3401354 bp Ori: AJF07752.1 Feature: domain Description: Avd_like Location: 3401016-3401325 bp Feature: domain Description: Avd_like Location: 3401 01 6-3401 325 bp Feature: gene Location: 3401419-3402477 bp Ori: AJF07753.1 Feature: domain Description: YfmG Location: 3401638-3402016 bp Feature: domain Description: YfmG Location: 3401 638-340201 6 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK08673 (3-deoxy-7-phosphoheptulonate synthase; Reviewed), PRK14501 (putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional), RVT-DGRs, Avd_like (cd16376), YfmG (COG1262)

Seq: CP010312.1 Geoalkalibacter subterraneus strain Red1 plasmid pGSUB1, complete sequence (242122 bp)
Overview 1 RT 1: 79230-85137 bp Neighborhood of RT #1 [79230, 85137] DUF3232 RVT_N RVT-GII GIIM HNHc Feature: gene Location: 79230-79667 bp Ori: AJF08153.1 Feature: domain Description: DUF3232 Location: 79269-79665 bp Feature: domain Description: DUF32 32 Location: 792 69-79665 bp Feature: gene Location: 79831-80250 bp Feature: gene Location: 81817-83547 bp Ori: AJF08155.1 Feature: domain Description: RVT_N Location: 81874-82114 bp Feature: domain Description: RVT_N Location: 81874-82 114 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82162-82879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 82 162 -82 879 bp Feature: domain Description: GIIM Note: maturase Location: 82933-83164 bp Feature: domain Description: GIIM Note: maturase Location: 82 933-83164 bp Feature: domain Description: HNHc Note: nucleases Location: 83383-83539 bp Feature: domain Description: HNHc Note: nucleases Location: 83383-83539 bp Feature: gene Location: 84076-84795 bp Feature: gene Location: 84808-85137 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF3232 (pfam11554), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507)