myRT

myRT report for GCA_000829885.1_ASM82988v1

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Seq: CP010555.1 Pseudomonas aeruginosa strain FRD1, complete genome (6712339 bp)
Overview 1 RT 1: 1699739-1712193 bp 2 RT 2: 3113098-3121014 bp 3 RT 3: 4431874-4445948 bp 4 RT 4: 4462205-4471024 bp Neighborhood of RT #1 [1699739, 1712426] TIGR02687 DUF262 RVT-UG5 AAA_21 AAA_21 YeeA Neighborhood of RT #2 [3113098, 3121097] COG4271 CHD CHD RVT-GII GIIM DUF772 ABC_phnC Neighborhood of RT #3 [4431874, 4445950] IMPa_N_2 IMPa_helical Peptidase_M60 COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #4 [4462205, 4471053] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Feature: gene Location: 1699739-1702246 bp Ori: AJF50282.1 Feature: domain Description: TIGR02687 Location: 1699754-1702193 bp Feature: domain Description: TIGR02687 Location: 1 699754-1 7021 93 bp Feature: gene Location: 1702243-1704114 bp Ori: AJF50283.1 Feature: domain Description: DUF262 Location: 1702291-1703059 bp Feature: domain Description: DUF262 Location: 1 702291 -1 703059 bp Feature: gene Location: 1705896-1708916 bp Ori: AJF50284.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1706391-1706862 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 1 706391 -1 706862 bp Feature: gene Location: 1709470-1710609 bp Ori: AJF50285.1 Feature: domain Description: AAA_21 Location: 1709542-1709611 bp Feature: domain Description: AAA_21 Location: 1 709542-1 70961 1 bp Feature: domain Description: AAA_21 Location: 1710085-1710415 bp Feature: domain Description: AAA_21 Location: 1 71 0085-1 71 041 5 bp Feature: gene Location: 1710606-1712426 bp Ori: AJF50286.1 Feature: domain Description: YeeA Location: 1711188-1712193 bp Feature: domain Description: YeeA Location: 1 71 1 1 88-1 71 21 93 bp Feature: gene Location: 3113098-3114009 bp Ori: AJF54680.1 Feature: domain Description: COG4271 Location: 3113323-3113992 bp Feature: domain Description: COG4271 Location: 31 1 3323-31 1 3992 bp Feature: gene Location: 3114090-3115634 bp Ori: AJF51522.1 Feature: domain Description: CHD Location: 3114306-3114720 bp Feature: domain Description: CHD Location: 31 1 4306-31 1 4720 bp Feature: domain Description: CHD Location: 3114948-3115437 bp Feature: domain Description: CHD Location: 31 1 4948-31 1 5437 bp Feature: gene Location: 3117629-3118897 bp Ori: AJF51523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3117842-3118499 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 1 7842-31 1 8499 bp Feature: domain Description: GIIM Note: maturase Location: 3118577-3118799 bp Feature: domain Description: GIIM Note: maturase Location: 31 1 8577-31 1 8799 bp Feature: gene Location: 3119286-3119927 bp Ori: AJF51524.1 Feature: domain Description: DUF772 Location: 3119436-3119631 bp Feature: domain Description: DUF772 Location: 31 1 9436-31 1 9631 bp Feature: gene Location: 3120270-3121097 bp Ori: AJF51525.1 Feature: domain Description: ABC_phnC Location: 3120300-3121014 bp Feature: domain Description: ABC_phnC Location: 31 20300-31 21 01 4 bp Feature: gene Location: 4431874-4434645 bp Ori: AJF52658.1 Feature: domain Description: IMPa_N_2 Location: 4432126-4432708 bp Feature: domain Description: IMPa_N_2 Location: 44321 26-4432708 bp Feature: domain Description: IMPa_helical Location: 4432789-4433116 bp Feature: domain Description: IMPa_helical Location: 4432789-44331 1 6 bp Feature: domain Description: Peptidase_M60 Location: 4433560-4434490 bp Feature: domain Description: Peptidase_M60 Location: 4433560-4434490 bp Feature: gene Location: 4435643-4436764 bp Ori: AJF52659.1 Feature: domain Description: COG3177 Location: 4435661-4436753 bp Feature: domain Description: COG31 77 Location: 4435661 -4436753 bp Feature: gene Location: 4437487-4439172 bp Ori: AJF52660.1 Feature: domain Description: RVT_N Location: 4437544-4437784 bp Feature: domain Description: RVT_N Location: 4437544-4437784 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4437832-4438468 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4437832-4438468 bp Feature: domain Description: GIIM Note: maturase Location: 4438522-4438753 bp Feature: domain Description: GIIM Note: maturase Location: 4438522-4438753 bp Feature: domain Description: HNH Note: nucleases Location: 4439005-4439143 bp Feature: domain Description: HNH Note: nucleases Location: 4439005-44391 43 bp Feature: gene Location: 4440253-4443990 bp Ori: AJF52661.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 4440361-4441018 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 4440361 -4441 01 8 bp Feature: domain Description: PRK09776 Location: 4441231-4441702 bp Feature: domain Description: PRK09776 Location: 4441 231 -4441 702 bp Feature: domain Description: PAS Location: 4441759-4442284 bp Feature: domain Description: PAS Location: 4441 759-4442284 bp Feature: domain Description: PRK10060 Location: 4442296-4443940 bp Feature: domain Description: PRK1 0060 Location: 4442296-4443940 bp Feature: gene Location: 4444097-4445950 bp Ori: AJF52662.1 Feature: domain Description: PRK05658 Location: 4444109-4445948 bp Feature: domain Description: PRK05658 Location: 44441 09-4445948 bp Feature: gene Location: 4462205-4463497 bp Ori: AJF52680.1 Feature: domain Description: PRK10770 Location: 4462295-4463489 bp Feature: domain Description: PRK1 0770 Location: 4462295-4463489 bp Feature: gene Location: 4463478-4466249 bp Ori: AJF52681.1 Feature: domain Description: LptD Location: 4463673-4466235 bp Feature: domain Description: LptD Location: 4463673-4466235 bp Feature: gene Location: 4466381-4468093 bp Ori: AJF52682.1 Feature: domain Description: RVT_N Location: 4466438-4466681 bp Feature: domain Description: RVT_N Location: 4466438-4466681 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4466726-4467362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4466726-4467362 bp Feature: domain Description: YkfC Location: 4467572-4467722 bp Feature: domain Description: YkfC Location: 4467572-4467722 bp Feature: domain Description: HNH Note: nucleases Location: 4467899-4468037 bp Feature: domain Description: HNH Note: nucleases Location: 4467899-4468037 bp Feature: gene Location: 4469366-4470382 bp Ori: AJF52683.1 Feature: domain Description: COG3178 Location: 4469369-4470368 bp Feature: domain Description: COG31 78 Location: 4469369-4470368 bp Feature: gene Location: 4470379-4471053 bp Ori: AJF52684.1 Feature: domain Description: NTP_transferase_like_1 Location: 4470385-4471024 bp Feature: domain Description: NTP_transferase_like_1 Location: 4470385-4471 024 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TIGR02687 (TIGR02687 family protein), DUF262 (pfam03235), RVT-UG5, AAA_21 (pfam13304), YeeA (COG1002), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), CHD (cd07302), RVT-GII, GIIM (pfam08388), DUF772 (pfam05598)
ABC_phnC (TIGR02315), IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402), COG3177 (Fic family protein ), RVT_N (pfam13655), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional), PAS (smart00091)
PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422)