myRT

myRT report for GCA_000831585.1_ASM83158v1

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Seq: CP010359.1 Pseudomonas plecoglossicida strain NyZ12, complete genome (6233254 bp)
Overview 1 RT 1: 1415600-1419503 bp 2 RT 2: 1605041-1609467 bp 3 RT 3: 2433475-2436753 bp 4 RT 4: 3038314-3047011 bp 5 RT 5: 3060099-3064801 bp 6 RT 6: 3516418-3524578 bp 7 RT 7: 4988581-4996755 bp 8 RT 8: 5612823-5618675 bp Neighborhood of RT #1 [1415600, 1419511] RVT-DGRs BKR_like_SDR_like PRK11139 Neighborhood of RT #2 [1605041, 1609493] AA_synth RVT-GII GIIM Bac_luciferase Flavin_Reduct Neighborhood of RT #3 [2433475, 2436753] Avd_like RVT-DGRs Neighborhood of RT #4 [3038314, 3047046] HyuA Hydantoinase_B RVT-GII GIIM Porin_O_P SLC-NCS1sbd_CobB-like Neighborhood of RT #5 [3060099, 3064860] IS5 RVT-GII GIIM DUF772 COG3547 Neighborhood of RT #6 [3516418, 3524578] PpsR RVT-GII GIIM Bac_GDH Neighborhood of RT #7 [4988581, 4996766] OprD TonB-siderophor RVT-GII GIIM PRK13551 rmlC Neighborhood of RT #8 [5612823, 5618731] OprD PRX_1cys RVT-GII GIIM PRK10569 PBP2_SsuA Feature: gene Location: 1415600-1415929 bp Feature: gene Location: 1416053-1416280 bp Feature: gene Location: 1416379-1416789 bp Ori: AJG12814.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1416385-1416634 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 41 6385-1 41 6634 bp Feature: gene Location: 1417815-1418519 bp Ori: AJG12815.1 Feature: domain Description: BKR_like_SDR_like Location: 1417827-1418511 bp Feature: domain Description: BKR_like_SDR_like Location: 1 41 7827-1 41 851 1 bp Feature: gene Location: 1418618-1419511 bp Ori: AJG12816.1 Feature: domain Description: PRK11139 Location: 1418639-1419503 bp Feature: domain Description: PRK1 1 1 39 Location: 1 41 8639-1 41 9503 bp Feature: gene Location: 1605041-1605637 bp Ori: AJG13006.1 Feature: domain Description: AA_synth Location: 1605056-1605584 bp Feature: domain Description: AA_synth Location: 1 605056-1 605584 bp Feature: gene Location: 1605650-1605982 bp Feature: gene Location: 1605966-1607222 bp Ori: AJG13008.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1606158-1606773 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 6061 58-1 606773 bp Feature: domain Description: GIIM Note: maturase Location: 1606830-1607055 bp Feature: domain Description: GIIM Note: maturase Location: 1 606830-1 607055 bp Feature: gene Location: 1607892-1608932 bp Ori: AJG13009.1 Feature: domain Description: Bac_luciferase Location: 1607895-1608840 bp Feature: domain Description: Bac_luciferase Location: 1 607895-1 608840 bp Feature: gene Location: 1609008-1609493 bp Ori: AJG13010.1 Feature: domain Description: Flavin_Reduct Location: 1609044-1609467 bp Feature: domain Description: Flavin_Reduct Location: 1 609044-1 609467 bp Feature: gene Location: 2433475-2434071 bp Feature: gene Location: 2434124-2434477 bp Ori: AJG13815.1 Feature: domain Description: Avd_like Location: 2434151-2434457 bp Feature: domain Description: Avd_like Location: 24341 51 -2434457 bp Feature: gene Location: 2434676-2435833 bp Ori: AJG13816.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2434925-2435681 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 2434925-2435681 bp Feature: gene Location: 2435877-2436305 bp Feature: gene Location: 2436610-2436753 bp Feature: gene Location: 3038314-3040428 bp Ori: AJG14402.1 Feature: domain Description: HyuA Location: 3038353-3040408 bp Feature: domain Description: HyuA Location: 3038353-3040408 bp Feature: gene Location: 3040440-3042185 bp Ori: AJG14403.1 Feature: domain Description: Hydantoinase_B Location: 3040455-3042039 bp Feature: domain Description: Hydantoinase_B Location: 3040455-3042039 bp Feature: gene Location: 3042486-3043763 bp Ori: AJG14404.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042747-3043362 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3042747-3043362 bp Feature: domain Description: GIIM Note: maturase Location: 3043416-3043644 bp Feature: domain Description: GIIM Note: maturase Location: 304341 6-3043644 bp Feature: gene Location: 3044359-3045537 bp Ori: AJG14405.1 Feature: domain Description: Porin_O_P Location: 3044584-3045421 bp Feature: domain Description: Porin_O_P Location: 3044584-3045421 bp Feature: gene Location: 3045685-3047046 bp Ori: AJG14406.1 Feature: domain Description: SLC-NCS1sbd_CobB-like Location: 3045742-3047011 bp Feature: domain Description: SLC-NCS1 sbd_CobB-like Location: 3045742-304701 1 bp Feature: gene Location: 3060099-3060233 bp Feature: gene Location: 3060813-3061271 bp Ori: AJG14420.1 Feature: domain Description: IS5 Location: 3060816-3061239 bp Feature: domain Description: IS5 Location: 306081 6-3061 239 bp Feature: gene Location: 3061343-3062602 bp Ori: AJG14421.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3061547-3062204 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3061 547-3062204 bp Feature: domain Description: GIIM Note: maturase Location: 3062282-3062504 bp Feature: domain Description: GIIM Note: maturase Location: 3062282-3062504 bp Feature: gene Location: 3063000-3063641 bp Ori: AJG14422.1 Feature: domain Description: DUF772 Location: 3063150-3063345 bp Feature: domain Description: DUF772 Location: 30631 50-3063345 bp Feature: gene Location: 3063835-3064860 bp Ori: AJG14423.1 Feature: domain Description: COG3547 Location: 3063850-3064801 bp Feature: domain Description: COG3547 Location: 3063850-3064801 bp Feature: gene Location: 3516418-3516567 bp Feature: gene Location: 3516649-3517467 bp Ori: AJG14862.1 Feature: domain Description: PpsR Location: 3516655-3517459 bp Feature: domain Description: PpsR Location: 351 6655-351 7459 bp Feature: gene Location: 3517617-3518873 bp Ori: AJG14863.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3517809-3518424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 351 7809-351 8424 bp Feature: domain Description: GIIM Note: maturase Location: 3518481-3518706 bp Feature: domain Description: GIIM Note: maturase Location: 351 8481 -351 8706 bp Feature: gene Location: 3519518-3524383 bp Ori: AJG14864.1 Feature: domain Description: Bac_GDH Location: 3519749-3524342 bp Feature: domain Description: Bac_GDH Location: 351 9749-3524342 bp Feature: gene Location: 3524438-3524578 bp Feature: gene Location: 4988581-4989900 bp Ori: AJG16265.1 Feature: domain Description: OprD Location: 4988665-4989895 bp Feature: domain Description: OprD Location: 4988665-4989895 bp Feature: gene Location: 4990406-4992484 bp Ori: AJG16266.1 Feature: domain Description: TonB-siderophor Location: 4990598-4992482 bp Feature: domain Description: TonB-siderophor Location: 4990598-4992482 bp Feature: gene Location: 4993043-4994335 bp Ori: AJG16267.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4993304-4993919 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4993304-499391 9 bp Feature: domain Description: GIIM Note: maturase Location: 4993973-4994177 bp Feature: domain Description: GIIM Note: maturase Location: 4993973-49941 77 bp Feature: gene Location: 4994835-4995941 bp Ori: AJG16268.1 Feature: domain Description: PRK13551 Location: 4994850-4995927 bp Feature: domain Description: PRK1 3551 Location: 4994850-4995927 bp Feature: gene Location: 4996221-4996766 bp Ori: AJG16269.1 Feature: domain Description: rmlC Location: 4996227-4996755 bp Feature: domain Description: rmlC Location: 4996227-4996755 bp Feature: gene Location: 5612823-5614157 bp Ori: AJG16838.1 Feature: domain Description: OprD Location: 5612889-5614152 bp Feature: domain Description: OprD Location: 561 2889-561 41 52 bp Feature: gene Location: 5614323-5614961 bp Ori: AJG16840.1 Feature: domain Description: PRX_1cys Location: 5614338-5614944 bp Feature: domain Description: PRX_1 cys Location: 561 4338-561 4944 bp Feature: gene Location: 5615487-5616779 bp Ori: AJG16841.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5615748-5616363 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 561 5748-561 6363 bp Feature: domain Description: GIIM Note: maturase Location: 5616417-5616621 bp Feature: domain Description: GIIM Note: maturase Location: 561 641 7-561 6621 bp Feature: gene Location: 5617088-5617681 bp Ori: AJG16842.1 Feature: domain Description: PRK10569 Location: 5617091-5617661 bp Feature: domain Description: PRK1 0569 Location: 561 7091 -561 7661 bp Feature: gene Location: 5617766-5618731 bp Ori: AJG16843.1 Feature: domain Description: PBP2_SsuA Location: 5617859-5618675 bp Feature: domain Description: PBP2_SsuA Location: 561 7859-561 8675 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-DGRs, BKR_like_SDR_like (cd05344), PRK11139 (DNA-binding transcriptional activator GcvA; Provisional), AA_synth (pfam06684), RVT-GII, GIIM (pfam08388), Bac_luciferase (pfam00296), Flavin_Reduct (smart00903), Avd_like (cd16376), HyuA (COG0145)
Hydantoinase_B (pfam02538), Porin_O_P (pfam07396), SLC-NCS1sbd_CobB-like (cd11484), IS5 (COG3039), DUF772 (pfam05598), COG3547 (Transposase ), PpsR (COG1806), Bac_GDH (pfam05088), OprD (pfam03573), TonB-siderophor (TIGR01783)
PRK13551 (agmatine deiminase; Provisional), rmlC (TIGR01221), PRX_1cys (cd03016), PRK10569 (NAD(P)H-dependent FMN reductase; Provisional), PBP2_SsuA (cd13557)