myRT

myRT report for GCA_000833105.2_ASM83310v2

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Seq: CP010086.2 Clostridium beijerinckii strain NCIMB 14988, complete genome (6485394 bp)
Overview 1 RT 1: 576090-587449 bp 2 RT 2: 884592-889524 bp 3 RT 3: 1076035-1080969 bp 4 RT 4: 1767312-1771836 bp 5 RT 5: 1865413-1869377 bp 6 RT 6: 2790395-2798253 bp 7 RT 7: 3315209-3321232 bp 8 RT 8: 3699297-3706443 bp 9 RT 9: 3751387-3757981 bp 10 RT 10: 4405969-4411127 bp 11 RT 11: 4466677-4473585 bp 12 RT 12: 5901702-5909259 bp 13 RT 13: 6097878-6102402 bp 14 RT 14: 6230797-6239014 bp Neighborhood of RT #1 [576090, 587472] Zn_dep_PLPC PepSY PepSY SLH SLH RVT-GII GIIM DUF445 YjiN DUF445 rSAM_fuse_unch Neighborhood of RT #2 [884592, 889544] COG3415 CelA RVT-GII GIIM PucG ECF-ribofla_trS Neighborhood of RT #3 [1076035, 1080980] sigma70-ECF YjcR RVT-GII GIIM TauA TauB Neighborhood of RT #4 [1767312, 1771836] HTH_XRE Rol_Rep_N Rep_trans RVT-GII Intron_maturas2 HNHc Rep_trans Neighborhood of RT #5 [1865413, 1869382] PHA02517 RVT_N RVT-GII GIIM PHA02517 InsE Neighborhood of RT #6 [2790395, 2798261] UgpE YicI RVT-GII GIIM PBP2_peptides_like AnsP Neighborhood of RT #7 [3315209, 3321232] HisM 3D RVT-GII GIIM PRK00029 Neighborhood of RT #8 [3699297, 3706451] PT_UbiA_UBIAD1 CoA_CoA_reduc RHOD_Pyr_redox RVT-GII GIIM DsrA YfcA Neighborhood of RT #9 [3751387, 3757983] DUF5105 RVT-GII GIIM Tar Neighborhood of RT #10 [4405969, 4411135] OmpR UBA_NAC_like_bac RVT-GII GIIM UBA_NAC_like_bac YjiC Neighborhood of RT #11 [4466677, 4473590] HTH_17 Collagen Collagen BclA_C RVT-GII GIIM QueG PRK05790 Neighborhood of RT #12 [5901702, 5909264] PTS_IIA_fru BglG PTS_EIIA_2 RVT-GII GIIM TagH Wzt_C-like TagG Neighborhood of RT #13 [6097878, 6102402] Rep_trans RVT-GII Intron_maturas2 HNHc HTH_XRE Rol_Rep_N Rep_trans Neighborhood of RT #14 [6230797, 6239016] MarR MFS_YfcJ_like RVT-GII GIIM BaeS COG4198 Feature: gene Location: 576090-576689 bp Ori: AJG97209.1 Feature: domain Description: Zn_dep_PLPC Location: 576168-576558 bp Feature: domain Description: Zn_dep_PLPC Location: 5761 68-576558 bp Feature: gene Location: 576941-579031 bp Ori: AJG97210.1 Feature: domain Description: PepSY Location: 577856-578030 bp Feature: domain Description: PepSY Location: 577856-578030 bp Feature: domain Description: PepSY Location: 578255-578306 bp Feature: domain Description: PepSY Location: 578255-578306 bp Feature: domain Description: SLH Location: 578555-578657 bp Feature: domain Description: SLH Location: 578555-578657 bp Feature: domain Description: SLH Location: 578870-578993 bp Feature: domain Description: SLH Location: 578870-578993 bp Feature: gene Location: 579500-580915 bp Ori: AMK50343.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 579857-580475 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 579857-580475 bp Feature: domain Description: GIIM Note: maturase Location: 580526-580751 bp Feature: domain Description: GIIM Note: maturase Location: 580526-580751 bp Feature: gene Location: 581120-585355 bp Ori: AJG97211.1 Feature: domain Description: DUF445 Location: 581162-582224 bp Feature: domain Description: DUF445 Location: 581 1 62-582224 bp Feature: domain Description: YjiN Location: 582662-583166 bp Feature: domain Description: YjiN Location: 582662-5831 66 bp Feature: domain Description: DUF445 Location: 583244-584225 bp Feature: domain Description: DUF445 Location: 583244-584225 bp Feature: gene Location: 585616-587472 bp Ori: AJG97212.1 Feature: domain Description: rSAM_fuse_unch Location: 585634-587449 bp Feature: domain Description: rSAM_fuse_unch Location: 585634-587449 bp Feature: gene Location: 884592-885128 bp Ori: AJG97459.1 Feature: domain Description: COG3415 Location: 884673-885102 bp Feature: domain Description: COG341 5 Location: 884673-8851 02 bp Feature: gene Location: 885311-885622 bp Ori: AJG97460.1 Feature: domain Description: CelA Location: 885314-885614 bp Feature: domain Description: CelA Location: 88531 4-88561 4 bp Feature: gene Location: 886134-887549 bp Ori: AMK50347.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886491-887109 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 886491 -8871 09 bp Feature: domain Description: GIIM Note: maturase Location: 887160-887385 bp Feature: domain Description: GIIM Note: maturase Location: 8871 60-887385 bp Feature: gene Location: 887835-888980 bp Ori: AJG97461.1 Feature: domain Description: PucG Location: 887856-888960 bp Feature: domain Description: PucG Location: 887856-888960 bp Feature: gene Location: 889011-889544 bp Ori: AJG97462.1 Feature: domain Description: ECF-ribofla_trS Location: 889038-889524 bp Feature: domain Description: ECF-ribofla_trS Location: 889038-889524 bp Feature: gene Location: 1076035-1076364 bp Ori: AJG97608.1 Feature: domain Description: sigma70-ECF Location: 1076053-1076356 bp Feature: domain Description: sigma70-ECF Location: 1 076053-1 076356 bp Feature: gene Location: 1076532-1076930 bp Ori: AJG97609.1 Feature: domain Description: YjcR Location: 1076541-1076649 bp Feature: domain Description: YjcR Location: 1 076541 -1 076649 bp Feature: gene Location: 1077370-1078785 bp Ori: AJG97610.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1077727-1078345 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 077727-1 078345 bp Feature: domain Description: GIIM Note: maturase Location: 1078396-1078621 bp Feature: domain Description: GIIM Note: maturase Location: 1 078396-1 078621 bp Feature: gene Location: 1079702-1080178 bp Ori: AJG97611.1 Feature: domain Description: TauA Location: 1079705-1080173 bp Feature: domain Description: TauA Location: 1 079705-1 0801 73 bp Feature: gene Location: 1080213-1080980 bp Ori: AJG97612.1 Feature: domain Description: TauB Location: 1080222-1080969 bp Feature: domain Description: TauB Location: 1 080222-1 080969 bp Feature: gene Location: 1767312-1767578 bp Feature: gene Location: 1767857-1768561 bp Feature: domain Description: HTH_XRE Location: 1767884-1768031 bp Feature: domain Description: HTH_XRE Location: 1 767884-1 768031 bp Feature: domain Description: Rol_Rep_N Location: 1768058-1768325 bp Feature: domain Description: Rol_Rep_N Location: 1 768058-1 768325 bp Feature: domain Description: Rep_trans Location: 1768349-1768562 bp Feature: domain Description: Rep_trans Location: 1 768349-1 768562 bp Feature: gene Location: 1769174-1770982 bp Ori: AMK50369.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1769438-1770263 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 769438-1 770263 bp Feature: domain Description: Intron_maturas2 Location: 1770335-1770686 bp Feature: domain Description: Intron_maturas2 Location: 1 770335-1 770686 bp Feature: domain Description: HNHc Note: nucleases Location: 1770803-1770953 bp Feature: domain Description: HNHc Note: nucleases Location: 1 770803-1 770953 bp Feature: gene Location: 1771085-1771570 bp Feature: domain Description: Rep_trans Location: 1771088-1771484 bp Feature: domain Description: Rep_trans Location: 1 771 088-1 771 484 bp Feature: gene Location: 1771615-1771836 bp Feature: gene Location: 1865413-1865802 bp Feature: gene Location: 1866110-1866328 bp Ori: AJG98267.1 Feature: domain Description: PHA02517 Location: 1866113-1866320 bp Feature: domain Description: PHA0251 7 Location: 1 8661 1 3-1 866320 bp Feature: gene Location: 1866420-1867958 bp Ori: AJG98268.1 Feature: domain Description: RVT_N Location: 1866492-1866735 bp Feature: domain Description: RVT_N Location: 1 866492-1 866735 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1866780-1867440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 866780-1 867440 bp Feature: domain Description: GIIM Note: maturase Location: 1867491-1867728 bp Feature: domain Description: GIIM Note: maturase Location: 1 867491 -1 867728 bp Feature: gene Location: 1868484-1869053 bp Ori: AJG98269.2 Feature: domain Description: PHA02517 Location: 1868508-1869033 bp Feature: domain Description: PHA0251 7 Location: 1 868508-1 869033 bp Feature: gene Location: 1869092-1869382 bp Ori: AJG98270.1 Feature: domain Description: InsE Location: 1869098-1869377 bp Feature: domain Description: InsE Location: 1 869098-1 869377 bp Feature: gene Location: 2790395-2791240 bp Ori: AJG99136.1 Feature: domain Description: UgpE Location: 2790425-2791235 bp Feature: domain Description: UgpE Location: 2790425-2791 235 bp Feature: gene Location: 2791383-2793410 bp Ori: AJG99137.1 Feature: domain Description: YicI Location: 2791581-2793399 bp Feature: domain Description: YicI Location: 2791 581 -2793399 bp Feature: gene Location: 2793880-2795295 bp Ori: AJG99138.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794237-2794855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2794237-2794855 bp Feature: domain Description: GIIM Note: maturase Location: 2794906-2795131 bp Feature: domain Description: GIIM Note: maturase Location: 2794906-27951 31 bp Feature: gene Location: 2795534-2796397 bp Ori: AJG99139.1 Feature: domain Description: PBP2_peptides_like Location: 2795696-2796356 bp Feature: domain Description: PBP2_peptides_like Location: 2795696-2796356 bp Feature: gene Location: 2796882-2798261 bp Ori: AJG99140.1 Feature: domain Description: AnsP Location: 2796888-2798253 bp Feature: domain Description: AnsP Location: 2796888-2798253 bp Feature: gene Location: 3315209-3315874 bp Ori: AJG99584.1 Feature: domain Description: HisM Location: 3315224-3315857 bp Feature: domain Description: HisM Location: 331 5224-331 5857 bp Feature: gene Location: 3316439-3316861 bp Ori: AJG99585.1 Feature: domain Description: 3D Location: 3316550-3316841 bp Feature: domain Description: 3D Location: 331 6550-331 6841 bp Feature: gene Location: 3317159-3318574 bp Ori: AJG99586.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3317516-3318134 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 331 751 6-331 81 34 bp Feature: domain Description: GIIM Note: maturase Location: 3318185-3318410 bp Feature: domain Description: GIIM Note: maturase Location: 331 81 85-331 841 0 bp Feature: gene Location: 3319082-3320554 bp Ori: AJG99587.1 Feature: domain Description: PRK00029 Location: 3319106-3320549 bp Feature: domain Description: PRK00029 Location: 331 91 06-3320549 bp Feature: gene Location: 3320933-3321232 bp Feature: gene Location: 3699297-3700184 bp Ori: AJG99944.1 Feature: domain Description: PT_UbiA_UBIAD1 Location: 3699318-3700152 bp Feature: domain Description: PT_UbiA_UBIAD1 Location: 369931 8-37001 52 bp Feature: gene Location: 3700683-3702383 bp Ori: AJG99945.1 Feature: domain Description: CoA_CoA_reduc Location: 3700731-3702006 bp Feature: domain Description: CoA_CoA_reduc Location: 3700731 -3702006 bp Feature: domain Description: RHOD_Pyr_redox Location: 3702072-3702306 bp Feature: domain Description: RHOD_Pyr_redox Location: 3702072-3702306 bp Feature: gene Location: 3702727-3704142 bp Ori: AMK50416.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3703084-3703702 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3703084-3703702 bp Feature: domain Description: GIIM Note: maturase Location: 3703753-3703978 bp Feature: domain Description: GIIM Note: maturase Location: 3703753-3703978 bp Feature: gene Location: 3704645-3705502 bp Ori: AJG99946.2 Feature: domain Description: DsrA Location: 3704678-3705494 bp Feature: domain Description: DsrA Location: 3704678-3705494 bp Feature: gene Location: 3705633-3706451 bp Ori: AJG99947.1 Feature: domain Description: YfcA Location: 3705639-3706443 bp Feature: domain Description: YfcA Location: 3705639-3706443 bp Feature: gene Location: 3751387-3751704 bp Feature: gene Location: 3752035-3752652 bp Ori: AJG99989.1 Feature: domain Description: DUF5105 Location: 3752125-3752605 bp Feature: domain Description: DUF51 05 Location: 37521 25-3752605 bp Feature: gene Location: 3753697-3755112 bp Ori: AMK50417.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3754054-3754672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3754054-3754672 bp Feature: domain Description: GIIM Note: maturase Location: 3754723-3754948 bp Feature: domain Description: GIIM Note: maturase Location: 3754723-3754948 bp Feature: gene Location: 3755732-3755899 bp Feature: gene Location: 3756262-3757983 bp Ori: AJG99993.1 Feature: domain Description: Tar Location: 3756595-3757981 bp Feature: domain Description: Tar Location: 3756595-3757981 bp Feature: gene Location: 4405969-4406649 bp Ori: AJH00562.1 Feature: domain Description: OmpR Location: 4405978-4406644 bp Feature: domain Description: OmpR Location: 4405978-4406644 bp Feature: gene Location: 4406642-4407196 bp Ori: AJH00563.1 Feature: domain Description: UBA_NAC_like_bac Location: 4406660-4406765 bp Feature: domain Description: UBA_NAC_like_bac Location: 4406660-4406765 bp Feature: gene Location: 4407347-4408762 bp Ori: AJH00564.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4407704-4408322 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4407704-4408322 bp Feature: domain Description: GIIM Note: maturase Location: 4408373-4408598 bp Feature: domain Description: GIIM Note: maturase Location: 4408373-4408598 bp Feature: gene Location: 4409241-4409783 bp Ori: AJH00565.1 Feature: domain Description: UBA_NAC_like_bac Location: 4409253-4409364 bp Feature: domain Description: UBA_NAC_like_bac Location: 4409253-4409364 bp Feature: gene Location: 4409978-4411135 bp Ori: AJH00566.1 Feature: domain Description: YjiC Location: 4410008-4411127 bp Feature: domain Description: YjiC Location: 441 0008-441 1 1 27 bp Feature: gene Location: 4466677-4467165 bp Ori: AJH00626.1 Feature: domain Description: HTH_17 Location: 4466692-4466839 bp Feature: domain Description: HTH_1 7 Location: 4466692-4466839 bp Feature: gene Location: 4467496-4468341 bp Feature: domain Description: Collagen Location: 4467508-4467670 bp Feature: domain Description: Collagen Location: 4467508-4467670 bp Feature: domain Description: Collagen Location: 4467763-4467931 bp Feature: domain Description: Collagen Location: 4467763-4467931 bp Feature: domain Description: BclA_C Location: 4467976-4468339 bp Feature: domain Description: BclA_C Location: 4467976-4468339 bp Feature: gene Location: 4468946-4470247 bp Ori: AMK50475.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4469201-4469891 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4469201 -4469891 bp Feature: domain Description: GIIM Note: maturase Location: 4469951-4470167 bp Feature: domain Description: GIIM Note: maturase Location: 4469951 -44701 67 bp Feature: gene Location: 4471194-4472225 bp Ori: AJH00629.1 Feature: domain Description: QueG Location: 4471206-4472211 bp Feature: domain Description: QueG Location: 4471 206-447221 1 bp Feature: gene Location: 4472412-4473590 bp Ori: AJH00630.1 Feature: domain Description: PRK05790 Location: 4472415-4473585 bp Feature: domain Description: PRK05790 Location: 447241 5-4473585 bp Feature: gene Location: 5901702-5902169 bp Ori: AJH01816.1 Feature: domain Description: PTS_IIA_fru Location: 5901726-5902137 bp Feature: domain Description: PTS_IIA_fru Location: 5901 726-59021 37 bp Feature: gene Location: 5902190-5904145 bp Ori: AJH01817.1 Feature: domain Description: BglG Location: 5902202-5903684 bp Feature: domain Description: BglG Location: 5902202-5903684 bp Feature: domain Description: PTS_EIIA_2 Location: 5903732-5904131 bp Feature: domain Description: PTS_EIIA_2 Location: 5903732-59041 31 bp Feature: gene Location: 5904876-5906291 bp Ori: AJH01818.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5905233-5905851 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5905233-5905851 bp Feature: domain Description: GIIM Note: maturase Location: 5905902-5906127 bp Feature: domain Description: GIIM Note: maturase Location: 5905902-59061 27 bp Feature: gene Location: 5907256-5908443 bp Ori: AJH01819.1 Feature: domain Description: TagH Location: 5907265-5907970 bp Feature: domain Description: TagH Location: 5907265-5907970 bp Feature: domain Description: Wzt_C-like Location: 5908039-5908432 bp Feature: domain Description: Wzt_C-like Location: 5908039-5908432 bp Feature: gene Location: 5908461-5909264 bp Ori: AJH01820.1 Feature: domain Description: TagG Location: 5908482-5909259 bp Feature: domain Description: TagG Location: 5908482-5909259 bp Feature: gene Location: 6097878-6098099 bp Feature: gene Location: 6098153-6098629 bp Feature: domain Description: Rep_trans Location: 6098156-6098552 bp Feature: domain Description: Rep_trans Location: 60981 56-6098552 bp Feature: gene Location: 6098732-6100540 bp Ori: AMK50513.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6098996-6099821 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6098996-6099821 bp Feature: domain Description: Intron_maturas2 Location: 6099893-6100244 bp Feature: domain Description: Intron_maturas2 Location: 6099893-61 00244 bp Feature: domain Description: HNHc Note: nucleases Location: 6100361-6100511 bp Feature: domain Description: HNHc Note: nucleases Location: 61 00361 -61 0051 1 bp Feature: gene Location: 6101153-6101857 bp Feature: domain Description: HTH_XRE Location: 6101180-6101327 bp Feature: domain Description: HTH_XRE Location: 61 01 1 80-61 01 327 bp Feature: domain Description: Rol_Rep_N Location: 6101354-6101621 bp Feature: domain Description: Rol_Rep_N Location: 61 01 354-61 01 621 bp Feature: domain Description: Rep_trans Location: 6101645-6101858 bp Feature: domain Description: Rep_trans Location: 61 01 645-61 01 858 bp Feature: gene Location: 6102136-6102402 bp Feature: gene Location: 6230797-6231228 bp Ori: AJH02059.1 Feature: domain Description: MarR Location: 6230851-6231205 bp Feature: domain Description: MarR Location: 6230851 -6231 205 bp Feature: gene Location: 6231248-6232453 bp Ori: AJH02060.1 Feature: domain Description: MFS_YfcJ_like Location: 6231308-6232400 bp Feature: domain Description: MFS_YfcJ_like Location: 6231 308-6232400 bp Feature: gene Location: 6233194-6234609 bp Ori: AMK50523.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6233551-6234169 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6233551 -62341 69 bp Feature: domain Description: GIIM Note: maturase Location: 6234220-6234445 bp Feature: domain Description: GIIM Note: maturase Location: 6234220-6234445 bp Feature: gene Location: 6235301-6236074 bp Ori: AMK50537.1 Feature: domain Description: BaeS Location: 6235304-6235967 bp Feature: domain Description: BaeS Location: 6235304-6235967 bp Feature: gene Location: 6237760-6239016 bp Ori: AJH02063.1 Feature: domain Description: COG4198 Location: 6237772-6239014 bp Feature: domain Description: COG41 98 Location: 6237772-623901 4 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Zn_dep_PLPC (smart00770), PepSY (pfam03413), SLH (pfam00395), RVT-GII, GIIM (pfam08388), DUF445 (pfam04286), YjiN (COG2733), rSAM_fuse_unch (TIGR03960), COG3415 (Transposase ), CelA (TIGR03030)
PucG (COG0075), ECF-ribofla_trS (pfam07155), sigma70-ECF (TIGR02937), YjcR (COG5484), TauA (COG4521), TauB (COG4525), HTH_XRE (smart00530), Rol_Rep_N (pfam18106), Rep_trans (pfam02486), Intron_maturas2 (pfam01348)
HNHc (smart00507), PHA02517 (putative transposase OrfB; Reviewed), RVT_N (pfam13655), InsE (COG2963), UgpE (COG0395), YicI (COG1501), PBP2_peptides_like (cd13530), AnsP (COG1113), HisM (COG0765), 3D (pfam06725)
PRK00029 (YdiU family protein), PT_UbiA_UBIAD1 (cd13962), CoA_CoA_reduc (TIGR03385), RHOD_Pyr_redox (cd01524), DsrA (COG2221), YfcA (COG0730), DUF5105 (pfam17118), Tar (COG0840), OmpR (COG0745), UBA_NAC_like_bac (cd14360)
YjiC (COG1819), HTH_17 (pfam12728), Collagen (pfam01391), BclA_C (pfam18573), QueG (COG1600), PRK05790 (putative acyltransferase; Provisional), PTS_IIA_fru (cl00163), BglG (COG3711), PTS_EIIA_2 (pfam00359), TagH (COG1134)
Wzt_C-like (cl15685), TagG (COG1682), MarR (pfam01047), MFS_YfcJ_like (cd17489), BaeS (COG0642), COG4198 (Uncharacterized conserved protein, DUF1015 family )