myRT

myRT report for GCA_000834395.1_ASM83439v1

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Seq: CP009781.1 Yersinia aldovae 670-83, complete genome (4471090 bp)
Overview 1 RT 1: 363747-374640 bp 2 RT 2: 390756-394327 bp Neighborhood of RT #1 [363747, 374678] PRK00170 PRK11131 RVT_N RVT-GII GIIM COG4644 DDE_Tnp_Tn3 PinE Neighborhood of RT #2 [390756, 394374] DDE_Tnp_Tn3 RVT_N RVT-GII GIIM COG4679 HTH_XRE Feature: gene Location: 363747-364352 bp Ori: AJJ63004.1 Feature: domain Description: PRK00170 Location: 363750-364347 bp Feature: domain Description: PRK001 70 Location: 363750-364347 bp Feature: gene Location: 364700-368587 bp Ori: AJJ62644.1 Gene: hrpA Feature: domain Description: PRK11131 Location: 364709-368576 bp Feature: domain Description: PRK1 1 1 31 Location: 364709-368576 bp Feature: gene Location: 368815-370296 bp Ori: AJJ64898.1 Gene: ltrA Feature: domain Description: RVT_N Location: 368866-369109 bp Feature: domain Description: RVT_N Location: 368866-3691 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 369154-369781 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3691 54-369781 bp Feature: domain Description: GIIM Note: maturase Location: 369838-370066 bp Feature: domain Description: GIIM Note: maturase Location: 369838-370066 bp Feature: gene Location: 370910-373924 bp Ori: AJJ63864.1 Feature: domain Description: COG4644 Location: 370976-371261 bp Feature: domain Description: COG4644 Location: 370976-371 261 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 372671-373844 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 372671 -373844 bp Feature: gene Location: 374085-374678 bp Ori: AJJ63079.1 Gene: tnpR Feature: domain Description: PinE Location: 374088-374640 bp Feature: domain Description: PinE Location: 374088-374640 bp Feature: gene Location: 390756-390923 bp Feature: gene Location: 391088-391285 bp Ori: AJJ64011.1 Feature: domain Description: DDE_Tnp_Tn3 Location: 391091-391205 bp Feature: domain Description: DDE_Tnp_Tn3 Location: 391 091 -391 205 bp Feature: gene Location: 391899-393380 bp Ori: AJJ63515.1 Gene: ltrA Feature: domain Description: RVT_N Location: 391950-392193 bp Feature: domain Description: RVT_N Location: 391 950-3921 93 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392238-392865 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 392238-392865 bp Feature: domain Description: GIIM Note: maturase Location: 392922-393150 bp Feature: domain Description: GIIM Note: maturase Location: 392922-3931 50 bp Feature: gene Location: 393725-394054 bp Ori: AJJ64725.1 Feature: domain Description: COG4679 Location: 393737-394049 bp Feature: domain Description: COG4679 Location: 393737-394049 bp Feature: gene Location: 394051-394374 bp Ori: AJJ62400.1 Feature: domain Description: HTH_XRE Location: 394174-394327 bp Feature: domain Description: HTH_XRE Location: 3941 74-394327 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK00170 (azoreductase; Reviewed), PRK11131 (ATP-dependent RNA helicase HrpA; Provisional), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4644 (Transposase and inactivated derivatives, TnpA family ), DDE_Tnp_Tn3 (pfam01526), PinE (COG1961), COG4679 (Phage-related protein ), HTH_XRE (smart00530)