myRT

myRT report for GCA_000835185.1_ASM83518v1

Download annotations/find similar RTs

Seq: CP009606.1 Bacillus cereus strain S2-8 plasmid pBFR_2, complete sequence (312478 bp)
Overview 1 RT 1: 50984-58371 bp 2 RT 2: 82061-86708 bp 3 RT 3: 100291-106723 bp 4 RT 4: 114328-122906 bp 5 RT 5: 138328-144495 bp Neighborhood of RT #1 [50984, 58385] RVT_N RVT-GII GIIM nuc_hydro DEXXQc_Upf1-like KOG1803 Neighborhood of RT #2 [82061, 86815] RVT-GII HNHc E1_enzyme_family PRTRC_A Neighborhood of RT #3 [100291, 106723] DUF3854 RVT-GII GIIM HNHc Neighborhood of RT #4 [114328, 123004] Replic_Relax RVT-GII Intron_maturas2 HNHc TraG-D_C xerC Neighborhood of RT #5 [138328, 144495] TcpE AAA_10 RVT-GII HNHc AAA_10 Feature: gene Location: 50984-51211 bp Feature: gene Location: 51377-51619 bp Feature: gene Location: 51820-53466 bp Ori: AJK37591.1 Gene: ltrA Feature: domain Description: RVT_N Location: 51862-52099 bp Feature: domain Description: RVT_N Location: 51 862-52099 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 52153-52813 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 521 53-5281 3 bp Feature: domain Description: GIIM Note: maturase Location: 52882-53113 bp Feature: domain Description: GIIM Note: maturase Location: 52882-531 1 3 bp Feature: gene Location: 54186-55136 bp Ori: AJK37316.1 Feature: domain Description: nuc_hydro Location: 54201-55107 bp Feature: domain Description: nuc_hydro Location: 54201 -551 07 bp Feature: gene Location: 55569-58385 bp Ori: AJK37423.1 Feature: domain Description: DEXXQc_Upf1-like Location: 56628-57837 bp Feature: domain Description: DEXXQc_Upf1 -like Location: 56628-57837 bp Feature: domain Description: KOG1803 Location: 58053-58371 bp Feature: domain Description: KOG1 803 Location: 58053-58371 bp Feature: gene Location: 82061-82189 bp Feature: gene Location: 82251-82754 bp Feature: gene Location: 82842-84722 bp Ori: AJK37553.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 83172-83901 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 831 72-83901 bp Feature: domain Description: HNHc Note: nucleases Location: 84459-84609 bp Feature: domain Description: HNHc Note: nucleases Location: 84459-84609 bp Feature: gene Location: 85422-85823 bp Ori: AJK37487.1 Feature: domain Description: E1_enzyme_family Location: 85470-85806 bp Feature: domain Description: E1 _enzyme_family Location: 85470-85806 bp Feature: gene Location: 85820-86815 bp Ori: AJK37549.1 Feature: domain Description: PRTRC_A Location: 86354-86708 bp Feature: domain Description: PRTRC_A Location: 86354-86708 bp Feature: gene Location: 100291-100521 bp Feature: gene Location: 101014-102198 bp Ori: AJK37482.1 Feature: domain Description: DUF3854 Location: 101845-102166 bp Feature: domain Description: DUF3854 Location: 1 01 845-1 021 66 bp Feature: gene Location: 102290-104185 bp Ori: AJK37393.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 102656-103355 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 02656-1 03355 bp Feature: domain Description: GIIM Note: maturase Location: 103439-103682 bp Feature: domain Description: GIIM Note: maturase Location: 1 03439-1 03682 bp Feature: domain Description: HNHc Note: nucleases Location: 103928-104066 bp Feature: domain Description: HNHc Note: nucleases Location: 1 03928-1 04066 bp Feature: gene Location: 104854-104997 bp Feature: gene Location: 105173-106723 bp Feature: gene Location: 114328-115878 bp Ori: AJK37485.1 Feature: domain Description: Replic_Relax Location: 114424-115147 bp Feature: domain Description: Replic_Relax Location: 1 1 4424-1 1 51 47 bp Feature: gene Location: 115850-117538 bp Feature: gene Location: 118154-119971 bp Ori: AJK37491.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 118418-119249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 841 8-1 1 9249 bp Feature: domain Description: Intron_maturas2 Location: 119330-119621 bp Feature: domain Description: Intron_maturas2 Location: 1 1 9330-1 1 9621 bp Feature: domain Description: HNHc Note: nucleases Location: 119768-119945 bp Feature: domain Description: HNHc Note: nucleases Location: 1 1 9768-1 1 9945 bp Feature: gene Location: 120075-121472 bp Ori: AJK37421.1 Feature: domain Description: TraG-D_C Location: 120219-120582 bp Feature: domain Description: TraG-D_C Location: 1 2021 9-1 20582 bp Feature: gene Location: 122039-123004 bp Ori: AJK37407.1 Feature: domain Description: xerC Location: 122057-122906 bp Feature: domain Description: xerC Location: 1 22057-1 22906 bp Feature: gene Location: 138328-138732 bp Ori: AJK37345.1 Feature: domain Description: TcpE Location: 138364-138637 bp Feature: domain Description: TcpE Location: 1 38364-1 38637 bp Feature: gene Location: 138792-140327 bp Ori: AJK37405.1 Feature: domain Description: AAA_10 Location: 140133-140310 bp Feature: domain Description: AAA_1 0 Location: 1 401 33-1 4031 0 bp Feature: gene Location: 141043-142875 bp Ori: AJK37505.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 141343-142048 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 41 343-1 42048 bp Feature: domain Description: HNHc Note: nucleases Location: 142627-142759 bp Feature: domain Description: HNHc Note: nucleases Location: 1 42627-1 42759 bp Feature: gene Location: 143133-144011 bp Ori: AJK37542.1 Feature: domain Description: AAA_10 Location: 143139-143895 bp Feature: domain Description: AAA_1 0 Location: 1 431 39-1 43895 bp Feature: gene Location: 144013-144495 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), nuc_hydro (cl00226), DEXXQc_Upf1-like (cd17934), KOG1803 (KOG1803, DNA helicase ), HNHc (smart00507), E1_enzyme_family (cl22428), PRTRC_A (TIGR03735), DUF3854 (pfam12965)
Replic_Relax (pfam13814), Intron_maturas2 (pfam01348), TraG-D_C (pfam12696), xerC (PRK01287), TcpE (pfam12648), AAA_10 (pfam12846)

Seq: CP009605.1 Bacillus cereus strain S2-8, complete genome (5271178 bp)
Overview 1 RT 1: 368823-373946 bp 2 RT 2: 974182-984922 bp 3 RT 3: 2114515-2125897 bp 4 RT 4: 2186329-2191341 bp Neighborhood of RT #1 [368823, 374044] caa3_CtaG amiF RVT-GII HNHc amiF YugN Neighborhood of RT #2 [974182, 985059] PRK12420 YbaK_EbsC RVT_N RVT-GII GIIM MTH1 Hit RVT_N RVT-GII GIIM HTH_3 TPR_12 Hydrolase_4 Neighborhood of RT #3 [2114515, 2125899] DUF2085 PRK12451 RVT-GII Intron_maturas2 HNHc SAM_MT YphP_YqiW DUF393 Nfu_N Virulence_fact HEAT RVT_N RVT-GII GIIM PRK06752 DUF4318 Neighborhood of RT #4 [2186329, 2191341] spore_ytfJ RVT_N RVT-GII GIIM Feature: gene Location: 368823-369728 bp Ori: AJK36504.1 Gene: ctaG Feature: domain Description: caa3_CtaG Location: 368832-369672 bp Feature: domain Description: caa3_CtaG Location: 368832 -369672 bp Feature: gene Location: 369955-370344 bp Ori: AJK34242.1 Feature: domain Description: amiF Location: 369958-370330 bp Feature: domain Description: amiF Location: 369958-370330 bp Feature: gene Location: 371060-372892 bp Ori: AJK36098.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371360-372065 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 371360-372 065 bp Feature: domain Description: HNHc Note: nucleases Location: 372644-372776 bp Feature: domain Description: HNHc Note: nucleases Location: 372 644-372 776 bp Feature: gene Location: 373009-373632 bp Ori: AJK33910.1 Feature: domain Description: amiF Location: 373012-373627 bp Feature: domain Description: amiF Location: 373012 -37362 7 bp Feature: gene Location: 373679-374044 bp Ori: AJK35307.1 Feature: domain Description: YugN Location: 373700-373946 bp Feature: domain Description: YugN Location: 373700-373946 bp Feature: gene Location: 974182-975459 bp Ori: AJK34192.1 Gene: hisS Feature: domain Description: PRK12420 Location: 974185-975445 bp Feature: domain Description: PRK12 42 0 Location: 974185-975445 bp Feature: gene Location: 975800-976276 bp Ori: AJK34126.1 Feature: domain Description: YbaK_EbsC Location: 975818-976268 bp Feature: domain Description: YbaK_EbsC Location: 975818-9762 68 bp Feature: gene Location: 977361-979007 bp Ori: AJK32162.1 Gene: ltrA Feature: domain Description: RVT_N Location: 977403-977640 bp Feature: domain Description: RVT_N Location: 977403-977640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977694-978354 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 977694-978354 bp Feature: domain Description: GIIM Note: maturase Location: 978423-978654 bp Feature: domain Description: GIIM Note: maturase Location: 97842 3-978654 bp Feature: gene Location: 979228-979716 bp Ori: AJK37063.1 Feature: domain Description: MTH1 Location: 979237-979648 bp Feature: domain Description: MTH1 Location: 9792 37-979648 bp Feature: gene Location: 979741-980214 bp Ori: AJK32315.1 Feature: domain Description: Hit Location: 979777-980167 bp Feature: domain Description: Hit Location: 979777-980167 bp Feature: gene Location: 980958-982604 bp Ori: AJK36483.1 Gene: ltrA Feature: domain Description: RVT_N Location: 981000-981237 bp Feature: domain Description: RVT_N Location: 981000-9812 37 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 981291-981951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9812 91-981951 bp Feature: domain Description: GIIM Note: maturase Location: 982020-982251 bp Feature: domain Description: GIIM Note: maturase Location: 982 02 0-982 2 51 bp Feature: gene Location: 982963-984087 bp Ori: AJK35309.1 Feature: domain Description: HTH_3 Location: 982993-983155 bp Feature: domain Description: HTH_3 Location: 982 993-983155 bp Feature: domain Description: TPR_12 Location: 983758-983851 bp Feature: domain Description: TPR_12 Location: 983758-983851 bp Feature: gene Location: 984097-985059 bp Ori: AJK35596.1 Feature: domain Description: Hydrolase_4 Location: 984262-984922 bp Feature: domain Description: Hydrolase_4 Location: 9842 62 -98492 2 bp Feature: gene Location: 2114515-2114733 bp Ori: AJK33621.1 Feature: domain Description: DUF2085 Location: 2114548-2114731 bp Feature: domain Description: DUF2 085 Location: 2 114548-2 114731 bp Feature: gene Location: 2114848-2116536 bp Ori: AJK34916.1 Gene: argS Feature: domain Description: PRK12451 Location: 2114851-2116534 bp Feature: domain Description: PRK12 451 Location: 2 114851-2 116534 bp Feature: gene Location: 2117162-2118979 bp Ori: AJK34638.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2117426-2118257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 11742 6-2 1182 57 bp Feature: domain Description: Intron_maturas2 Location: 2118338-2118629 bp Feature: domain Description: Intron_maturas2 Location: 2 118338-2 11862 9 bp Feature: domain Description: HNHc Note: nucleases Location: 2118776-2118953 bp Feature: domain Description: HNHc Note: nucleases Location: 2 118776-2 118953 bp Feature: gene Location: 2119595-2120161 bp Ori: AJK34468.1 Feature: domain Description: SAM_MT Location: 2119718-2120150 bp Feature: domain Description: SAM_MT Location: 2 119718-2 12 0150 bp Feature: gene Location: 2120211-2120645 bp Ori: AJK36560.1 Feature: domain Description: YphP_YqiW Location: 2120235-2120643 bp Feature: domain Description: YphP_YqiW Location: 2 12 02 35-2 12 0643 bp Feature: gene Location: 2120729-2121112 bp Ori: AJK35022.1 Feature: domain Description: DUF393 Location: 2120738-2121056 bp Feature: domain Description: DUF393 Location: 2 12 0738-2 12 1056 bp Feature: gene Location: 2121116-2122243 bp Ori: AJK37072.1 Feature: domain Description: Nfu_N Location: 2121134-2121380 bp Feature: domain Description: Nfu_N Location: 2 12 1134-2 12 1380 bp Feature: domain Description: Virulence_fact Location: 2121437-2121671 bp Feature: domain Description: Virulence_fact Location: 2 12 1437-2 12 1671 bp Feature: domain Description: HEAT Location: 2121782-2122232 bp Feature: domain Description: HEAT Location: 2 12 1782 -2 12 2 2 32 bp Feature: gene Location: 2122618-2124264 bp Ori: AJK33240.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2122660-2122897 bp Feature: domain Description: RVT_N Location: 2 12 2 660-2 12 2 897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2122951-2123611 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 12 2 951-2 12 3611 bp Feature: domain Description: GIIM Note: maturase Location: 2123680-2123911 bp Feature: domain Description: GIIM Note: maturase Location: 2 12 3680-2 12 3911 bp Feature: gene Location: 2125151-2125483 bp Ori: AJK37134.1 Gene: ssb Feature: domain Description: PRK06752 Location: 2125154-2125481 bp Feature: domain Description: PRK06752 Location: 2 12 5154-2 12 5481 bp Feature: gene Location: 2125645-2125899 bp Ori: AJK36635.1 Feature: domain Description: DUF4318 Location: 2125690-2125897 bp Feature: domain Description: DUF4318 Location: 2 12 5690-2 12 5897 bp Feature: gene Location: 2186329-2186754 bp Ori: AJK32302.1 Gene: ytfJ Feature: domain Description: spore_ytfJ Location: 2186335-2186704 bp Feature: domain Description: spore_ytfJ Location: 2 186335-2 186704 bp Feature: gene Location: 2187722-2188045 bp Feature: gene Location: 2188679-2190325 bp Ori: AJK36612.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2188721-2188958 bp Feature: domain Description: RVT_N Location: 2 18872 1-2 188958 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2189012-2189672 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 189012 -2 189672 bp Feature: domain Description: GIIM Note: maturase Location: 2189741-2189972 bp Feature: domain Description: GIIM Note: maturase Location: 2 189741-2 189972 bp Feature: gene Location: 2190654-2190872 bp Feature: gene Location: 2191150-2191341 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT caa3_CtaG (TIGR02737), amiF (PRK13287), RVT-GII, HNHc (smart00507), YugN (pfam08868), PRK12420 (histidyl-tRNA synthetase; Provisional), YbaK_EbsC (TIGR00011), RVT_N (pfam13655), GIIM (pfam08388), MTH1
Hit (COG0537), HTH_3 (pfam01381), TPR_12 (pfam13424), Hydrolase_4 (pfam12146), DUF2085 (pfam09858), PRK12451 (arginyl-tRNA synthetase; Reviewed), Intron_maturas2 (pfam01348), SAM_MT (pfam04445), YphP_YqiW (TIGR04191), DUF393 (pfam04134)
Nfu_N (smart00932), Virulence_fact (pfam13769), HEAT (sd00044), PRK06752 (single-stranded DNA-binding protein; Validated), DUF4318 (pfam14201), spore_ytfJ (TIGR02874)