myRT

myRT report for GCA_000876545.1_ASM87654v1

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Seq: CP010525.1 Bacillus coagulans strain HM-08, complete genome (3624641 bp)
Overview 1 RT 1: 514949-519221 bp 2 RT 2: 1398975-1404320 bp 3 RT 3: 1752999-1758910 bp 4 RT 4: 1901059-1906294 bp 5 RT 5: 2309888-2314528 bp 6 RT 6: 2420477-2426912 bp 7 RT 7: 2462254-2467580 bp 8 RT 8: 2993916-2998231 bp Neighborhood of RT #1 [514949, 519221] Prok-TraM RVT-GII GIIM YbbC Neighborhood of RT #2 [1398975, 1404328] DUF2512 RVT-GII GIIM TPR tig Neighborhood of RT #3 [1752999, 1758981] PRK05764 asnC RVT-GII GIIM DnaD nth Neighborhood of RT #4 [1901059, 1906294] AllC PucG RVT-GII GIIM RTP Neighborhood of RT #5 [2309888, 2314539] pyrB RVT-GII GIIM PyrR rluA_subfam Neighborhood of RT #6 [2420477, 2426950] R_switched_YkoY RVT-GII GIIM prfC PRK11360 Neighborhood of RT #7 [2462254, 2467580] ChrA ChrA RVT-GII GIIM PRK03584 Neighborhood of RT #8 [2993916, 2998231] HMG-CoA-S_prok RVT-GII GIIM yflN-like_MBL-fold Feature: gene Location: 514949-515362 bp Feature: gene Location: 515389-515715 bp Ori: AJO21360.1 Feature: domain Description: Prok-TraM Location: 515440-515656 bp Feature: domain Description: Prok-TraM Location: 51 5440-51 5656 bp Feature: gene Location: 516349-517758 bp Ori: AJO21361.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 516697-517312 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 6697-51 731 2 bp Feature: domain Description: GIIM Note: maturase Location: 517366-517585 bp Feature: domain Description: GIIM Note: maturase Location: 51 7366-51 7585 bp Feature: gene Location: 517834-519102 bp Ori: AJO21362.1 Feature: domain Description: YbbC Location: 517855-519091 bp Feature: domain Description: YbbC Location: 51 7855-51 9091 bp Feature: gene Location: 519099-519221 bp Feature: gene Location: 1398975-1399256 bp Feature: gene Location: 1399406-1399849 bp Ori: AJO22374.1 Feature: domain Description: DUF2512 Location: 1399409-1399814 bp Feature: domain Description: DUF251 2 Location: 1 399409-1 39981 4 bp Feature: gene Location: 1400302-1401711 bp Ori: AJO22375.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1400650-1401265 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 400650-1 401 265 bp Feature: domain Description: GIIM Note: maturase Location: 1401319-1401538 bp Feature: domain Description: GIIM Note: maturase Location: 1 401 31 9-1 401 538 bp Feature: gene Location: 1401886-1402878 bp Ori: AJO22376.1 Feature: domain Description: TPR Location: 1401940-1402219 bp Feature: domain Description: TPR Location: 1 401 940-1 40221 9 bp Feature: gene Location: 1403042-1404328 bp Ori: AJO22377.1 Feature: domain Description: tig Location: 1403045-1404320 bp Feature: domain Description: tig Location: 1 403045-1 404320 bp Feature: gene Location: 1752999-1754186 bp Ori: AJO22816.1 Feature: domain Description: PRK05764 Location: 1753002-1754172 bp Feature: domain Description: PRK05764 Location: 1 753002-1 7541 72 bp Feature: gene Location: 1754243-1755574 bp Ori: AJO22817.1 Feature: domain Description: asnC Location: 1754294-1755569 bp Feature: domain Description: asnC Location: 1 754294-1 755569 bp Feature: gene Location: 1755660-1757069 bp Ori: AJO22818.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1756008-1756623 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 756008-1 756623 bp Feature: domain Description: GIIM Note: maturase Location: 1756677-1756896 bp Feature: domain Description: GIIM Note: maturase Location: 1 756677-1 756896 bp Feature: gene Location: 1757489-1758274 bp Ori: AJO22819.1 Feature: domain Description: DnaD Location: 1757588-1758272 bp Feature: domain Description: DnaD Location: 1 757588-1 758272 bp Feature: gene Location: 1758322-1758981 bp Ori: AJO22820.1 Feature: domain Description: nth Location: 1758337-1758910 bp Feature: domain Description: nth Location: 1 758337-1 75891 0 bp Feature: gene Location: 1901059-1902297 bp Ori: AJO23005.1 Feature: domain Description: AllC Location: 1901095-1902292 bp Feature: domain Description: AllC Location: 1 901 095-1 902292 bp Feature: gene Location: 1902298-1903578 bp Ori: AJO23006.1 Feature: domain Description: PucG Location: 1902352-1903546 bp Feature: domain Description: PucG Location: 1 902352-1 903546 bp Feature: gene Location: 1903841-1905250 bp Ori: AJO23007.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1904189-1904804 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 9041 89-1 904804 bp Feature: domain Description: GIIM Note: maturase Location: 1904858-1905077 bp Feature: domain Description: GIIM Note: maturase Location: 1 904858-1 905077 bp Feature: gene Location: 1905690-1906091 bp Ori: AJO23008.1 Feature: domain Description: RTP Location: 1905747-1906086 bp Feature: domain Description: RTP Location: 1 905747-1 906086 bp Feature: gene Location: 1906163-1906294 bp Feature: gene Location: 2309888-2310787 bp Ori: AJO23468.1 Feature: domain Description: pyrB Location: 2309891-2310764 bp Feature: domain Description: pyrB Location: 2309891 -231 0764 bp Feature: gene Location: 2310779-2310946 bp Feature: gene Location: 2311022-2312431 bp Ori: AJO23470.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2311370-2311985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 231 1 370-231 1 985 bp Feature: domain Description: GIIM Note: maturase Location: 2312039-2312258 bp Feature: domain Description: GIIM Note: maturase Location: 231 2039-231 2258 bp Feature: gene Location: 2312915-2313457 bp Ori: AJO23471.1 Feature: domain Description: PyrR Location: 2312924-2313449 bp Feature: domain Description: PyrR Location: 231 2924-231 3449 bp Feature: gene Location: 2313628-2314539 bp Ori: AJO23472.1 Feature: domain Description: rluA_subfam Location: 2313661-2314528 bp Feature: domain Description: rluA_subfam Location: 231 3661 -231 4528 bp Feature: gene Location: 2420477-2421280 bp Ori: AJO23617.1 Feature: domain Description: R_switched_YkoY Location: 2420528-2421215 bp Feature: domain Description: R_switched_YkoY Location: 2420528-2421 21 5 bp Feature: gene Location: 2421605-2422075 bp Feature: gene Location: 2422238-2423647 bp Ori: AJO23619.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2422586-2423201 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2422586-2423201 bp Feature: domain Description: GIIM Note: maturase Location: 2423255-2423474 bp Feature: domain Description: GIIM Note: maturase Location: 2423255-2423474 bp Feature: gene Location: 2424089-2425657 bp Ori: AJO23620.1 Feature: domain Description: prfC Location: 2424104-2425646 bp Feature: domain Description: prfC Location: 24241 04-2425646 bp Feature: gene Location: 2425874-2426950 bp Ori: AJO23621.1 Feature: domain Description: PRK11360 Location: 2425946-2426912 bp Feature: domain Description: PRK1 1 360 Location: 2425946-242691 2 bp Feature: gene Location: 2462254-2462853 bp Ori: AJO23666.1 Feature: domain Description: ChrA Location: 2462269-2462830 bp Feature: domain Description: ChrA Location: 2462269-2462830 bp Feature: gene Location: 2462850-2463389 bp Ori: AJO23667.1 Feature: domain Description: ChrA Location: 2462856-2463372 bp Feature: domain Description: ChrA Location: 2462856-2463372 bp Feature: gene Location: 2463490-2464914 bp Ori: AJO23668.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2463838-2464453 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2463838-2464453 bp Feature: domain Description: GIIM Note: maturase Location: 2464507-2464729 bp Feature: domain Description: GIIM Note: maturase Location: 2464507-2464729 bp Feature: gene Location: 2465359-2467350 bp Ori: AJO23669.1 Feature: domain Description: PRK03584 Location: 2465383-2467321 bp Feature: domain Description: PRK03584 Location: 2465383-2467321 bp Feature: gene Location: 2467428-2467580 bp Feature: gene Location: 2993916-2994128 bp Feature: gene Location: 2994159-2995343 bp Ori: AJO24307.1 Feature: domain Description: HMG-CoA-S_prok Location: 2994168-2995314 bp Feature: domain Description: HMG-CoA-S_prok Location: 29941 68-299531 4 bp Feature: gene Location: 2995411-2996820 bp Ori: AJO24308.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2995759-2996374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2995759-2996374 bp Feature: domain Description: GIIM Note: maturase Location: 2996428-2996647 bp Feature: domain Description: GIIM Note: maturase Location: 2996428-2996647 bp Feature: gene Location: 2997261-2997998 bp Ori: AJO24309.1 Feature: domain Description: yflN-like_MBL-fold Location: 2997306-2997948 bp Feature: domain Description: yflN-like_MBL-fold Location: 2997306-2997948 bp Feature: gene Location: 2998076-2998231 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Prok-TraM (pfam09228), RVT-GII, GIIM (pfam08388), YbbC (COG3876), DUF2512 (pfam10710), TPR (smart00028), tig (TIGR00115), PRK05764 (aspartate aminotransferase; Provisional), asnC (PRK03932), DnaD (COG3935)
nth (TIGR01083), AllC (TIGR03176), PucG (COG0075), RTP (pfam02334), pyrB (PRK13814), PyrR (COG2065), rluA_subfam (TIGR00005), R_switched_YkoY (TIGR03716), prfC (TIGR00503), PRK11360 (two-component system sensor histidine kinase AtoS)
ChrA (COG2059), PRK03584 (acetoacetate--CoA ligase), HMG-CoA-S_prok (TIGR01835), yflN-like_MBL-fold (cd07721)