myRT

myRT report for GCA_000876675.2_ASM87667v2

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Seq: CP030354.1 Novosphingobium sp. P6W plasmid pP6W1, complete sequence (720525 bp)
Overview 1 RT 1: 153839-158543 bp 2 RT 2: 559847-565226 bp Neighborhood of RT #1 [153839, 158543] COG4584 InsE RVT-GII GIIM PHA02517 Neighborhood of RT #2 [559847, 565226] Polbeta RVT-UG3 RVT-UG8 COG1708 HEPN Feature: gene Location: 153839-154540 bp Feature: domain Description: COG4584 Location: 153950-154538 bp Feature: domain Description: COG4584 Location: 1 53950-1 54538 bp Feature: gene Location: 154667-155346 bp Feature: domain Description: InsE Location: 154670-154943 bp Feature: domain Description: InsE Location: 1 54670-1 54943 bp Feature: gene Location: 155996-157510 bp Ori: AXB80564.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 156254-156989 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 56254-1 56989 bp Feature: domain Description: GIIM Note: maturase Location: 157073-157289 bp Feature: domain Description: GIIM Note: maturase Location: 1 57073-1 57289 bp Feature: gene Location: 157578-158042 bp Feature: domain Description: PHA02517 Location: 157596-158007 bp Feature: domain Description: PHA0251 7 Location: 1 57596-1 58007 bp Feature: gene Location: 158299-158543 bp Feature: gene Location: 559847-560257 bp Feature: gene Location: 560254-560586 bp Ori: AXB80436.1 Feature: domain Description: Polbeta Location: 560269-560479 bp Feature: domain Description: Polbeta Location: 560269-560479 bp Feature: gene Location: 560577-561818 bp Ori: AXB80437.1 Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 560865-561348 bp Feature: RT Description: RVT-UG3 Note: UG3 RT Location: 560865-561 348 bp Feature: gene Location: 561811-563784 bp Ori: AXB80438.1 Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 562333-562780 bp Feature: RT Description: RVT-UG8 Note: UG8 RT Location: 562333-562780 bp Feature: gene Location: 563992-564921 bp Ori: AXB80592.1 Feature: domain Description: COG1708 Location: 564073-564430 bp Feature: domain Description: COG1 708 Location: 564073-564430 bp Feature: domain Description: HEPN Location: 564517-564850 bp Feature: domain Description: HEPN Location: 56451 7-564850 bp Feature: gene Location: 564981-565226 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4584 (Transposase ), InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), Polbeta (pfam18765), RVT-UG3, RVT-UG8, COG1708 (Predicted nucleotidyltransferase ), HEPN (smart00748)

Seq: CP030352.1 Novosphingobium sp. P6W chromosome 1, complete sequence (3451315 bp)
Overview 1 RT 1: 2584328-2589525 bp Neighborhood of RT #1 [2584328, 2589530] InsE RVT-GII GIIM PHA02517 INT_C_like_1 Feature: gene Location: 2584328-2584906 bp Feature: gene Location: 2585039-2585781 bp Feature: domain Description: InsE Location: 2585048-2585354 bp Feature: domain Description: InsE Location: 2 585048-2 585354 bp Feature: gene Location: 2586431-2587945 bp Ori: AXB78202.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2586689-2587424 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 586689-2 58742 4 bp Feature: domain Description: GIIM Note: maturase Location: 2587508-2587724 bp Feature: domain Description: GIIM Note: maturase Location: 2 587508-2 58772 4 bp Feature: gene Location: 2588013-2588504 bp Feature: domain Description: PHA02517 Location: 2588022-2588496 bp Feature: domain Description: PHA02 517 Location: 2 58802 2 -2 588496 bp Feature: gene Location: 2588541-2589530 bp Ori: AXB77213.1 Feature: domain Description: INT_C_like_1 Location: 2589261-2589525 bp Feature: domain Description: INT_C_like_1 Location: 2 5892 61-2 58952 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT InsE (COG2963), RVT-GII, GIIM (pfam08388), PHA02517 (putative transposase OrfB; Reviewed), INT_C_like_1 (cd01184)

Seq: CP030353.1 Novosphingobium sp. P6W chromosome 2, complete sequence (2246020 bp)
Overview 1 RT 1: 885784-890789 bp 2 RT 2: 1153253-1156843 bp Neighborhood of RT #1 [885784, 890890] PRK12937 AcrR RVT-GII GIIM COG3547 Neighborhood of RT #2 [1153253, 1156843] AcrR DltE RVT-GII GIIM Feature: gene Location: 885784-886515 bp Ori: AXB78922.1 Feature: domain Description: PRK12937 Location: 885799-886507 bp Feature: domain Description: PRK1293 7 Location: 885799-886507 bp Feature: gene Location: 886608-887192 bp Ori: AXB78923.1 Feature: domain Description: AcrR Location: 886617-887160 bp Feature: domain Description: AcrR Location: 886617-887160 bp Feature: gene Location: 887667-888989 bp Ori: AXB78924.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887958-888621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 887958-888621 bp Feature: domain Description: GIIM Note: maturase Location: 888693-888906 bp Feature: domain Description: GIIM Note: maturase Location: 888693 -888906 bp Feature: gene Location: 888982-889232 bp Feature: gene Location: 889772-890890 bp Ori: AXB78925.1 Feature: domain Description: COG3547 Location: 889802-890789 bp Feature: domain Description: COG3 547 Location: 889802-890789 bp Feature: gene Location: 1153253-1153819 bp Ori: AXB79086.1 Feature: domain Description: AcrR Location: 1153256-1153778 bp Feature: domain Description: AcrR Location: 1153 256-1153 778 bp Feature: gene Location: 1153926-1154271 bp Feature: domain Description: DltE Location: 1153932-1154088 bp Feature: domain Description: DltE Location: 1153 93 2-1154088 bp Feature: gene Location: 1154678-1156000 bp Ori: AXB79087.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154969-1155632 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1154969-115563 2 bp Feature: domain Description: GIIM Note: maturase Location: 1155704-1155917 bp Feature: domain Description: GIIM Note: maturase Location: 1155704-1155917 bp Feature: gene Location: 1155993-1156243 bp Feature: gene Location: 1156640-1156843 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK12937 (short chain dehydrogenase; Provisional), AcrR (COG1309), RVT-GII, GIIM (pfam08388), COG3547 (Transposase ), DltE (COG3967)