myRT

myRT report for GCA_000953315.1_Wau001

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Seq: LK055284.1 Wolbachia endosymbiont of Drosophila simulans wAu genome assembly, chromosome: 1 (1268461 bp)
Overview 1 RT 1: 43489-48011 bp 2 RT 2: 414105-418311 bp 3 RT 3: 521799-527920 bp 4 RT 4: 536860-543495 bp 5 RT 5: 582316-585974 bp 6 RT 6: 588471-594911 bp 7 RT 7: 633584-641311 bp 8 RT 8: 667208-672697 bp 9 RT 9: 889603-895829 bp 10 RT 10: 1087021-1092100 bp Neighborhood of RT #1 [43489, 48016] T_den_put_tspse RVT-GII GIIM HNHc RVT_N RVT-GII PDDEXK_2 Dimer_Tnp_Tn5 Neighborhood of RT #2 [414105, 418311] WPE_wolbac T_den_put_tspse RVT_N RVT-GII GIIM Neighborhood of RT #3 [521799, 527922] MiaB-like-C gatA RVT-GII InsE Neighborhood of RT #4 [536860, 543500] glmS RVT_N RVT-GII GIIM T_den_put_tspse murB Neighborhood of RT #5 [582316, 585974] RVT_N RVT-GII GIIM Neighborhood of RT #6 [588471, 596245] PRK09279 RVT_N RVT-GII GIIM T_den_put_tspse ANK Neighborhood of RT #7 [633584, 641496] RuvC Virulence_RhuM RVT-GII PRK07078 repA Neighborhood of RT #8 [667208, 672744] mutL RVT_N RVT-GII GIIM PDDEXK_2 PMM_PGM Neighborhood of RT #9 [889603, 895849] FbpB T_den_put_tspse RVT_N RVT-GII GIIM PRK05447 Neighborhood of RT #10 [1087021, 1092120] PRK14012 T_den_put_tspse RVT_N RVT-GII GIIM apaG Feature: gene Location: 43489-44436 bp Feature: gene Location: 44651-45061 bp Ori: CDR78436.1 Feature: domain Description: T_den_put_tspse Location: 44756-45041 bp Feature: domain Description: T_den_put_tspse Location: 44756-45041 bp Feature: gene Location: 45058-46083 bp Ori: CDR78437.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45106-45421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 451 06-45421 bp Feature: domain Description: GIIM Note: maturase Location: 45514-45730 bp Feature: domain Description: GIIM Note: maturase Location: 4551 4-45730 bp Feature: domain Description: HNHc Note: nucleases Location: 45928-46069 bp Feature: domain Description: HNHc Note: nucleases Location: 45928-46069 bp Feature: gene Location: 46029-46829 bp Ori: CDR78438.1 Gene: ltrA_1 Feature: domain Description: RVT_N Location: 46164-46410 bp Feature: domain Description: RVT_N Location: 461 64-4641 0 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46452-46764 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 46452-46764 bp Feature: gene Location: 47226-47633 bp Ori: CDR78439.1 Feature: domain Description: PDDEXK_2 Location: 47304-47619 bp Feature: domain Description: PDDEXK_2 Location: 47304-4761 9 bp Feature: gene Location: 47741-48016 bp Ori: CDR78440.1 Feature: domain Description: Dimer_Tnp_Tn5 Location: 47855-48011 bp Feature: domain Description: Dimer_Tnp_Tn5 Location: 47855-4801 1 bp Feature: gene Location: 414105-414494 bp Ori: CDR78826.1 Feature: domain Description: WPE_wolbac Location: 414291-414363 bp Feature: domain Description: WPE_wolbac Location: 41 4291 -41 4363 bp Feature: gene Location: 414501-415241 bp Ori: CDR78827.1 Feature: domain Description: T_den_put_tspse Location: 414627-415233 bp Feature: domain Description: T_den_put_tspse Location: 41 4627-41 5233 bp Feature: gene Location: 415238-416680 bp Ori: CDR78828.1 Gene: ltrA_2 Feature: domain Description: RVT_N Location: 415253-415421 bp Feature: domain Description: RVT_N Location: 41 5253-41 5421 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 415472-416123 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 5472-41 61 23 bp Feature: domain Description: GIIM Note: maturase Location: 416174-416408 bp Feature: domain Description: GIIM Note: maturase Location: 41 61 74-41 6408 bp Feature: gene Location: 416824-417072 bp Feature: gene Location: 418048-418311 bp Feature: gene Location: 521799-523025 bp Ori: CDR78920.1 Gene: miaB_2 Feature: domain Description: MiaB-like-C Location: 521814-522978 bp Feature: domain Description: MiaB-like-C Location: 521 81 4-522978 bp Feature: gene Location: 523415-524884 bp Ori: CDR78921.1 Gene: gatA Feature: domain Description: gatA Location: 523463-524849 bp Feature: domain Description: gatA Location: 523463-524849 bp Feature: gene Location: 525246-526484 bp Ori: CDR78922.1 Gene: ltrA_3 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525426-526116 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 525426-5261 1 6 bp Feature: gene Location: 527031-527546 bp Feature: gene Location: 527659-527922 bp Ori: CDR78924.1 Feature: domain Description: InsE Location: 527668-527920 bp Feature: domain Description: InsE Location: 527668-527920 bp Feature: gene Location: 536860-538698 bp Ori: CDR78938.1 Gene: glmS Feature: domain Description: glmS Location: 536884-538696 bp Feature: domain Description: glmS Location: 536884-538696 bp Feature: gene Location: 539584-539832 bp Feature: gene Location: 539870-541417 bp Ori: CDR78940.1 Gene: ltrA_4 Feature: domain Description: RVT_N Location: 539921-540158 bp Feature: domain Description: RVT_N Location: 539921 -5401 58 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540209-540860 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 540209-540860 bp Feature: domain Description: GIIM Note: maturase Location: 540911-541145 bp Feature: domain Description: GIIM Note: maturase Location: 54091 1 -541 1 45 bp Feature: gene Location: 541414-542211 bp Ori: CDR78941.1 Feature: domain Description: T_den_put_tspse Location: 541540-542194 bp Feature: domain Description: T_den_put_tspse Location: 541 540-5421 94 bp Feature: gene Location: 542613-543500 bp Ori: CDR78942.1 Gene: murB Feature: domain Description: murB Location: 542625-543495 bp Feature: domain Description: murB Location: 542625-543495 bp Feature: gene Location: 582316-582519 bp Feature: gene Location: 582618-582785 bp Feature: gene Location: 582782-584329 bp Ori: CDR78996.1 Gene: ltrA_5 Feature: domain Description: RVT_N Location: 582833-583070 bp Feature: domain Description: RVT_N Location: 582833-583070 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 583121-583772 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5831 21 -583772 bp Feature: domain Description: GIIM Note: maturase Location: 583823-584057 bp Feature: domain Description: GIIM Note: maturase Location: 583823-584057 bp Feature: gene Location: 584367-584615 bp Feature: gene Location: 584937-585974 bp Feature: gene Location: 588471-591245 bp Ori: CDR79001.1 Gene: ppdK Feature: domain Description: PRK09279 Location: 588519-591234 bp Feature: domain Description: PRK09279 Location: 58851 9-591 234 bp Feature: gene Location: 591995-592243 bp Feature: gene Location: 592281-593828 bp Ori: CDR79003.1 Gene: ltrA_6 Feature: domain Description: RVT_N Location: 592332-592569 bp Feature: domain Description: RVT_N Location: 592332-592569 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592620-593271 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 592620-593271 bp Feature: domain Description: GIIM Note: maturase Location: 593322-593556 bp Feature: domain Description: GIIM Note: maturase Location: 593322-593556 bp Feature: gene Location: 593825-594637 bp Ori: CDR79004.1 Feature: domain Description: T_den_put_tspse Location: 593951-594617 bp Feature: domain Description: T_den_put_tspse Location: 593951 -59461 7 bp Feature: gene Location: 594629-596245 bp Ori: CDR79005.1 Feature: domain Description: ANK Location: 594635-594911 bp Feature: domain Description: ANK Location: 594635-59491 1 bp Feature: gene Location: 633584-633910 bp Ori: CDR79044.1 Feature: domain Description: RuvC Location: 633686-633857 bp Feature: domain Description: RuvC Location: 633686-633857 bp Feature: gene Location: 635232-636236 bp Ori: CDR79045.1 Feature: domain Description: Virulence_RhuM Location: 635421-636171 bp Feature: domain Description: Virulence_RhuM Location: 635421 -6361 71 bp Feature: gene Location: 636895-638133 bp Ori: CDR79046.1 Gene: ltrA_7 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 637075-637765 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 637075-637765 bp Feature: gene Location: 639299-639490 bp Feature: gene Location: 639472-641496 bp Ori: CDR79048.1 Feature: domain Description: PRK07078 Location: 639535-640453 bp Feature: domain Description: PRK07078 Location: 639535-640453 bp Feature: domain Description: repA Location: 640552-641311 bp Feature: domain Description: repA Location: 640552-641 31 1 bp Feature: gene Location: 667208-668440 bp Ori: CDR79070.1 Gene: mutL_1 Feature: domain Description: mutL Location: 667259-668435 bp Feature: domain Description: mutL Location: 667259-668435 bp Feature: gene Location: 668829-668972 bp Feature: gene Location: 669010-670557 bp Ori: CDR79072.1 Gene: ltrA_8 Feature: domain Description: RVT_N Location: 669061-669298 bp Feature: domain Description: RVT_N Location: 669061 -669298 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669349-670000 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 669349-670000 bp Feature: domain Description: GIIM Note: maturase Location: 670051-670285 bp Feature: domain Description: GIIM Note: maturase Location: 670051 -670285 bp Feature: gene Location: 670554-671282 bp Ori: CDR79073.1 Feature: domain Description: PDDEXK_2 Location: 670680-671151 bp Feature: domain Description: PDDEXK_2 Location: 670680-671 1 51 bp Feature: gene Location: 671389-672744 bp Ori: CDR79074.1 Gene: algC Feature: domain Description: PMM_PGM Location: 671404-672697 bp Feature: domain Description: PMM_PGM Location: 671 404-672697 bp Feature: gene Location: 889603-891201 bp Ori: CDR79284.1 Feature: domain Description: FbpB Location: 889630-891187 bp Feature: domain Description: FbpB Location: 889630-891 1 87 bp Feature: gene Location: 891105-891998 bp Ori: CDR79285.1 Feature: domain Description: T_den_put_tspse Location: 891231-891885 bp Feature: domain Description: T_den_put_tspse Location: 891 231 -891 885 bp Feature: gene Location: 891995-893542 bp Ori: CDR79286.1 Gene: ltrA_9 Feature: domain Description: RVT_N Location: 892046-892283 bp Feature: domain Description: RVT_N Location: 892046-892283 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892334-892985 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 892334-892985 bp Feature: domain Description: GIIM Note: maturase Location: 893036-893270 bp Feature: domain Description: GIIM Note: maturase Location: 893036-893270 bp Feature: gene Location: 893580-893828 bp Feature: gene Location: 894686-895849 bp Ori: CDR79288.1 Gene: dxr Feature: domain Description: PRK05447 Location: 894692-895829 bp Feature: domain Description: PRK05447 Location: 894692-895829 bp Feature: gene Location: 1087021-1088268 bp Ori: CDR79498.1 Gene: iscS Feature: domain Description: PRK14012 Location: 1087060-1088266 bp Feature: domain Description: PRK1 401 2 Location: 1 087060-1 088266 bp Feature: gene Location: 1088303-1089103 bp Ori: CDR79499.1 Feature: domain Description: T_den_put_tspse Location: 1088429-1089083 bp Feature: domain Description: T_den_put_tspse Location: 1 088429-1 089083 bp Feature: gene Location: 1089100-1090647 bp Ori: CDR79500.1 Gene: ltrA_10 Feature: domain Description: RVT_N Location: 1089151-1089388 bp Feature: domain Description: RVT_N Location: 1 0891 51 -1 089388 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1089439-1090090 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 089439-1 090090 bp Feature: domain Description: GIIM Note: maturase Location: 1090141-1090375 bp Feature: domain Description: GIIM Note: maturase Location: 1 0901 41 -1 090375 bp Feature: gene Location: 1090685-1090933 bp Feature: gene Location: 1091719-1092120 bp Ori: CDR79502.1 Gene: apaG Feature: domain Description: apaG Location: 1091737-1092100 bp Feature: domain Description: apaG Location: 1 091 737-1 0921 00 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT T_den_put_tspse (TIGR01784), RVT-GII, GIIM (pfam08388), HNHc (smart00507), RVT_N (pfam13655), PDDEXK_2 (pfam12784), Dimer_Tnp_Tn5 (pfam02281), WPE_wolbac (TIGR02697), MiaB-like-C (TIGR01579), gatA (TIGR00132)
InsE (COG2963), glmS (TIGR01135), murB (TIGR00179), PRK09279 (pyruvate phosphate dikinase; Provisional), ANK (smart00248), RuvC (pfam02075), Virulence_RhuM (pfam13310), PRK07078 (hypothetical protein; Validated), repA, mutL (PRK00095)
PMM_PGM (cd03089), FbpB (COG1178), PRK05447 (1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional), PRK14012 (IscS subfamily cysteine desulfurase), apaG (PRK05461)