myRT

myRT report for GCA_000959325.1_ASM95932v1

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Seq: CP009548.1 Burkholderia sp. 2002721687 chromosome II, complete sequence (2913181 bp)
Overview 1 RT 1: 1334585-1340026 bp 2 RT 2: 1450413-1455852 bp Neighborhood of RT #1 [1334585, 1340049] Dcm Dcm RVT-DGRs Avd_like DUF1566 Neighborhood of RT #2 [1450413, 1455959] InsE TnpB_IS66 RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Transposase_mut Feature: gene Location: 1334585-1336084 bp Feature: gene Location: 1336103-1337866 bp Ori: AJY38650.1 Feature: domain Description: Dcm Location: 1336154-1336601 bp Feature: domain Description: Dcm Location: 1 3361 54-1 336601 bp Feature: domain Description: Dcm Location: 1336697-1337822 bp Feature: domain Description: Dcm Location: 1 336697-1 337822 bp Feature: gene Location: 1337863-1338873 bp Ori: AJY40358.1 Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1337956-1338643 bp Feature: RT Description: RVT-DGRs Note: DGRs RT Location: 1 337956-1 338643 bp Feature: gene Location: 1339196-1339570 bp Ori: AJY39149.1 Feature: domain Description: Avd_like Location: 1339223-1339529 bp Feature: domain Description: Avd_like Location: 1 339223-1 339529 bp Feature: gene Location: 1339585-1340049 bp Ori: AJY40018.1 Feature: domain Description: DUF1566 Location: 1339846-1340026 bp Feature: domain Description: DUF1 566 Location: 1 339846-1 340026 bp Feature: gene Location: 1450413-1450841 bp Ori: AJY40114.1 Feature: domain Description: InsE Location: 1450482-1450704 bp Feature: domain Description: InsE Location: 1 450482-1 450704 bp Feature: gene Location: 1450838-1451170 bp Ori: AJY40683.1 Feature: domain Description: TnpB_IS66 Location: 1450865-1451153 bp Feature: domain Description: TnpB_IS66 Location: 1 450865-1 451 1 53 bp Feature: gene Location: 1451500-1452981 bp Ori: AJY40673.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1451911-1452601 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 451 91 1 -1 452601 bp Feature: gene Location: 1453125-1454567 bp Ori: AJY39066.1 Feature: domain Description: LZ_Tnp_IS66 Location: 1453227-1453440 bp Feature: domain Description: LZ_Tnp_IS66 Location: 1 453227-1 453440 bp Feature: domain Description: zf-IS66 Location: 1453467-1453587 bp Feature: domain Description: zf-IS66 Location: 1 453467-1 453587 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1453638-1454493 bp Feature: domain Description: DDE_Tnp_IS66 Location: 1 453638-1 454493 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1454517-1454565 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1 45451 7-1 454565 bp Feature: gene Location: 1454682-1455959 bp Ori: AJY38822.1 Feature: domain Description: Transposase_mut Location: 1454700-1455852 bp Feature: domain Description: Transposase_mut Location: 1 454700-1 455852 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Dcm (COG0270), RVT-DGRs, Avd_like (cd16376), DUF1566 (pfam07603), InsE (COG2963), TnpB_IS66 (pfam05717), RVT-GII, LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050)
DDE_Tnp_IS66_C (pfam13817), Transposase_mut (pfam00872)

Seq: CP009549.1 Burkholderia sp. 2002721687 chromosome I, complete sequence (4067533 bp)
Overview 1 RT 1: 236148-243410 bp 2 RT 2: 626275-630963 bp 3 RT 3: 947711-953145 bp 4 RT 4: 1343360-1350144 bp 5 RT 5: 1929505-1936192 bp 6 RT 6: 2026390-2034185 bp 7 RT 7: 2397172-2402364 bp 8 RT 8: 2725716-2731377 bp Neighborhood of RT #1 [236148, 243427] LivM LivG LivF RVT-GII RVT-GII GIIM PRK05192 gidB Neighborhood of RT #2 [626275, 631127] InsE TnpB_IS66 RVT-GII LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C Integrase_1 Neighborhood of RT #3 [947711, 953174] PRK08903 PurM RVT-GII GIIM TIGR02246 miaA Neighborhood of RT #4 [1343360, 1350149] KOG3954 AcylCoA_DH_N ACAD_fadE5 Acyl-CoA_dh_C RVT-GII GIIM PRK00711 PRK11169 Neighborhood of RT #5 [1929505, 1936192] PRK11014 chaperone_ClpB RVT-GII GIIM DEDD_Tnp_IS110 HHH_5 Transposase_20 Neighborhood of RT #6 [2026390, 2034220] RVT-UG7 Transposase_mut INT_Rci_Hp1_C Neighborhood of RT #7 [2397172, 2402402] Flp COG3464 RVT-GII GIIM RVT-GII TauA PRK10406 Neighborhood of RT #8 [2725716, 2731385] ArdA RVT-GII GIIM PRK12554 Feature: gene Location: 236148-237932 bp Ori: AJY42939.1 Feature: domain Description: LivM Location: 236178-237099 bp Feature: domain Description: LivM Location: 2 36178-2 37099 bp Feature: domain Description: LivG Location: 237180-237921 bp Feature: domain Description: LivG Location: 2 37180-2 3792 1 bp Feature: gene Location: 237947-238690 bp Ori: AJY42317.1 Feature: domain Description: LivF Location: 237956-238670 bp Feature: domain Description: LivF Location: 2 37956-2 38670 bp Feature: gene Location: 239333-239776 bp Ori: AJY41130.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239525-239708 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 3952 5-2 39708 bp Feature: gene Location: 239808-240590 bp Ori: AJY41759.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 239817-240138 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 39817-2 40138 bp Feature: domain Description: GIIM Note: maturase Location: 240192-240408 bp Feature: domain Description: GIIM Note: maturase Location: 2 40192 -2 40408 bp Feature: gene Location: 240762-242735 bp Ori: AJY43364.1 Gene: gidA Feature: domain Description: PRK05192 Location: 240780-242664 bp Feature: domain Description: PRK05192 Location: 2 40780-2 42 664 bp Feature: gene Location: 242786-243427 bp Ori: AJY43415.1 Gene: rsmG Feature: domain Description: gidB Location: 242849-243410 bp Feature: domain Description: gidB Location: 2 42 849-2 43410 bp Feature: gene Location: 626275-626703 bp Ori: AJY42161.1 Feature: domain Description: InsE Location: 626344-626566 bp Feature: domain Description: InsE Location: 62 6344-62 6566 bp Feature: gene Location: 626700-627032 bp Ori: AJY43081.1 Feature: domain Description: TnpB_IS66 Location: 626727-627015 bp Feature: domain Description: TnpB_IS66 Location: 62 672 7-62 7015 bp Feature: gene Location: 627362-628843 bp Ori: AJY42467.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 627773-628463 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 7773-62 8463 bp Feature: gene Location: 628987-630540 bp Ori: AJY44173.1 Feature: domain Description: LZ_Tnp_IS66 Location: 629089-629302 bp Feature: domain Description: LZ_Tnp_IS66 Location: 62 9089-62 9302 bp Feature: domain Description: zf-IS66 Location: 629329-629449 bp Feature: domain Description: zf-IS66 Location: 62 932 9-62 9449 bp Feature: domain Description: DDE_Tnp_IS66 Location: 629500-630355 bp Feature: domain Description: DDE_Tnp_IS66 Location: 62 9500-630355 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 630379-630487 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 630379-630487 bp Feature: gene Location: 630651-631127 bp Ori: AJY40840.1 Feature: domain Description: Integrase_1 Location: 630654-630963 bp Feature: domain Description: Integrase_1 Location: 630654-630963 bp Feature: gene Location: 947711-948436 bp Ori: AJY42922.1 Gene: hda Feature: domain Description: PRK08903 Location: 947723-948401 bp Feature: domain Description: PRK08903 Location: 94772 3-948401 bp Feature: gene Location: 948769-949824 bp Ori: AJY42989.1 Gene: purM Feature: domain Description: PurM Location: 948805-949813 bp Feature: domain Description: PurM Location: 948805-949813 bp Feature: gene Location: 950468-951727 bp Ori: AJY41218.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950660-951275 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 950660-9512 75 bp Feature: domain Description: GIIM Note: maturase Location: 951329-951545 bp Feature: domain Description: GIIM Note: maturase Location: 95132 9-951545 bp Feature: gene Location: 951978-952172 bp Ori: AJY43636.1 Feature: domain Description: TIGR02246 Location: 951987-952143 bp Feature: domain Description: TIGR02 2 46 Location: 951987-952 143 bp Feature: gene Location: 952200-953174 bp Ori: AJY44133.1 Gene: miaA Feature: domain Description: miaA Location: 952230-953145 bp Feature: domain Description: miaA Location: 952 2 30-953145 bp Feature: gene Location: 1343360-1344295 bp Ori: AJY43529.1 Feature: domain Description: KOG3954 Location: 1343366-1344290 bp Feature: domain Description: KOG3954 Location: 1343366-13442 90 bp Feature: gene Location: 1344409-1346199 bp Ori: AJY44301.1 Feature: domain Description: AcylCoA_DH_N Location: 1344415-1344505 bp Feature: domain Description: AcylCoA_DH_N Location: 1344415-1344505 bp Feature: domain Description: ACAD_fadE5 Location: 1344529-1345771 bp Feature: domain Description: ACAD_fadE5 Location: 134452 9-1345771 bp Feature: domain Description: Acyl-CoA_dh_C Location: 1345807-1346149 bp Feature: domain Description: Acyl-CoA_dh_C Location: 1345807-1346149 bp Feature: gene Location: 1346852-1348111 bp Ori: AJY40743.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1347044-1347659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1347044-1347659 bp Feature: domain Description: GIIM Note: maturase Location: 1347713-1347929 bp Feature: domain Description: GIIM Note: maturase Location: 1347713-134792 9 bp Feature: gene Location: 1348229-1349515 bp Ori: AJY41995.1 Feature: domain Description: PRK00711 Location: 1348232-1349474 bp Feature: domain Description: PRK00711 Location: 13482 32 -1349474 bp Feature: gene Location: 1349661-1350149 bp Ori: AJY43116.1 Feature: domain Description: PRK11169 Location: 1349670-1350144 bp Feature: domain Description: PRK11169 Location: 1349670-1350144 bp Feature: gene Location: 1929505-1930002 bp Ori: AJY41565.1 Feature: domain Description: PRK11014 Location: 1929508-1929937 bp Feature: domain Description: PRK11014 Location: 192 9508-192 9937 bp Feature: gene Location: 1930205-1932802 bp Ori: AJY41200.1 Gene: clpB Feature: domain Description: chaperone_ClpB Location: 1930223-1932779 bp Feature: domain Description: chaperone_ClpB Location: 19302 2 3-1932 779 bp Feature: gene Location: 1933483-1934475 bp Ori: AJY41475.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1933675-1934290 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1933675-19342 90 bp Feature: domain Description: GIIM Note: maturase Location: 1934344-1934440 bp Feature: domain Description: GIIM Note: maturase Location: 1934344-1934440 bp Feature: gene Location: 1934458-1935663 bp Ori: AJY43659.1 Feature: domain Description: DEDD_Tnp_IS110 Location: 1934500-1934962 bp Feature: domain Description: DEDD_Tnp_IS110 Location: 1934500-1934962 bp Feature: domain Description: HHH_5 Location: 1935007-1935142 bp Feature: domain Description: HHH_5 Location: 1935007-1935142 bp Feature: domain Description: Transposase_20 Location: 1935289-1935532 bp Feature: domain Description: Transposase_2 0 Location: 19352 89-1935532 bp Feature: gene Location: 1935947-1936192 bp Feature: gene Location: 2026390-2026998 bp Feature: gene Location: 2027139-2029718 bp Feature: gene Location: 2029997-2031625 bp Ori: AJY42574.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2030411-2030807 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 2 030411-2 030807 bp Feature: gene Location: 2031672-2032949 bp Ori: AJY42284.1 Feature: domain Description: Transposase_mut Location: 2031690-2032842 bp Feature: domain Description: Transposase_mut Location: 2 031690-2 032 842 bp Feature: gene Location: 2033231-2034220 bp Ori: AJY41266.1 Feature: domain Description: INT_Rci_Hp1_C Location: 2033735-2034185 bp Feature: domain Description: INT_Rci_Hp1_C Location: 2 033735-2 034185 bp Feature: gene Location: 2397172-2397363 bp Ori: AJY43273.1 Feature: domain Description: Flp Location: 2397175-2397343 bp Feature: domain Description: Flp Location: 2 397175-2 397343 bp Feature: gene Location: 2397851-2398309 bp Ori: AJY42113.1 Feature: domain Description: COG3464 Location: 2397887-2398163 bp Feature: domain Description: COG3464 Location: 2 397887-2 398163 bp Feature: gene Location: 2398460-2399329 bp Ori: AJY41274.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2398463-2398877 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 398463-2 398877 bp Feature: domain Description: GIIM Note: maturase Location: 2398931-2399147 bp Feature: domain Description: GIIM Note: maturase Location: 2 398931-2 399147 bp Feature: gene Location: 2399275-2399718 bp Ori: AJY41593.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2399467-2399659 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 399467-2 399659 bp Feature: gene Location: 2400518-2400856 bp Ori: AJY43900.1 Feature: domain Description: TauA Location: 2400587-2400848 bp Feature: domain Description: TauA Location: 2 400587-2 400848 bp Feature: gene Location: 2401098-2402402 bp Ori: AJY44163.1 Feature: domain Description: PRK10406 Location: 2401122-2402364 bp Feature: domain Description: PRK10406 Location: 2 40112 2 -2 402 364 bp Feature: gene Location: 2725716-2725994 bp Feature: gene Location: 2726004-2726405 bp Ori: AJY43187.1 Feature: domain Description: ArdA Location: 2726064-2726385 bp Feature: domain Description: ArdA Location: 2 72 6064-2 72 6385 bp Feature: gene Location: 2726685-2727770 bp Ori: AJY43118.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2726877-2727492 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 72 6877-2 72 7492 bp Feature: domain Description: GIIM Note: maturase Location: 2727546-2727750 bp Feature: domain Description: GIIM Note: maturase Location: 2 72 7546-2 72 7750 bp Feature: gene Location: 2728454-2728693 bp Feature: gene Location: 2730555-2731385 bp Ori: AJY41127.1 Feature: domain Description: PRK12554 Location: 2730561-2731377 bp Feature: domain Description: PRK12 554 Location: 2 730561-2 731377 bp Sorry, 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Associated domains:myRT LivM (COG4177), LivG (COG0411), LivF (COG0410), RVT-GII, GIIM (pfam08388), PRK05192 (tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG), gidB (PRK00107), InsE (COG2963), TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007)
zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), Integrase_1 (pfam12835), PRK08903 (DnaA regulatory inactivator Hda; Validated), PurM (COG0150), TIGR02246 (conserved hypothetical protein), miaA (TIGR00174), KOG3954 (KOG3954, Electron transfer flavoprotein, alpha subunit ), AcylCoA_DH_N (pfam12418)
ACAD_fadE5 (cd01153), Acyl-CoA_dh_C (pfam12806), PRK00711 (D-amino acid dehydrogenase), PRK11169 (leucine-responsive transcriptional regulator Lrp), PRK11014 (HTH-type transcriptional repressor NsrR), chaperone_ClpB (TIGR03346), DEDD_Tnp_IS110 (pfam01548), HHH_5 (pfam14520), Transposase_20 (pfam02371), RVT-UG7
Transposase_mut (pfam00872), INT_Rci_Hp1_C (cd00796), Flp (COG3847), COG3464 (Transposase ), TauA (COG4521), PRK10406 (alpha-ketoglutarate transporter; Provisional), ArdA (pfam07275), PRK12554 (undecaprenyl pyrophosphate phosphatase; Reviewed)