myRT

myRT report for GCA_000961515.1_ASM96151v1

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Seq: CP010024.1 Paraburkholderia fungorum strain ATCC BAA-463 plasmid pBIL, complete sequence (437218 bp)
Overview 1 RT 1: 392600-396631 bp Neighborhood of RT #1 [392600, 396654] STE14 RVT-GII GIIM Rieske_proteo Feature: gene Location: 392600-393259 bp Ori: AJZ56149.1 Feature: domain Description: STE14 Location: 392729-393218 bp Feature: domain Description: STE1 4 Location: 392729-39321 8 bp Feature: gene Location: 393184-393720 bp Feature: gene Location: 393917-395242 bp Ori: AJZ56445.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394208-394871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 394208-394871 bp Feature: domain Description: GIIM Note: maturase Location: 394943-395156 bp Feature: domain Description: GIIM Note: maturase Location: 394943-3951 56 bp Feature: gene Location: 395123-395398 bp Feature: gene Location: 396034-396654 bp Ori: AJZ56198.1 Gene: petA Feature: domain Description: Rieske_proteo Location: 396070-396631 bp Feature: domain Description: Rieske_proteo Location: 396070-396631 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT STE14 (COG2020), RVT-GII, GIIM (pfam08388), Rieske_proteo (TIGR01416)

Seq: CP010025.1 Paraburkholderia fungorum strain ATCC BAA-463 chromosome 3, complete sequence (650149 bp)
Overview 1 RT 1: 248698-254248 bp Neighborhood of RT #1 [248698, 254274] IstB_IS21 COG4584 RVT-GII GIIM InsE PHA02517 Feature: gene Location: 248698-249486 bp Ori: AJZ56827.1 Feature: domain Description: IstB_IS21 Location: 248860-249391 bp Feature: domain Description: IstB_IS2 1 Location: 2 48860-2 49391 bp Feature: gene Location: 249489-251015 bp Ori: AJZ56595.1 Feature: domain Description: COG4584 Location: 249783-250392 bp Feature: domain Description: COG4584 Location: 2 49783-2 50392 bp Feature: gene Location: 251505-252773 bp Ori: AJZ57080.1 Gene: ltrA Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 251754-252417 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 51754-2 52 417 bp Feature: domain Description: GIIM Note: maturase Location: 252486-252702 bp Feature: domain Description: GIIM Note: maturase Location: 2 52 486-2 52 702 bp Feature: gene Location: 253040-253363 bp Ori: AJZ56593.1 Feature: domain Description: InsE Location: 253052-253352 bp Feature: domain Description: InsE Location: 2 53052 -2 53352 bp Feature: gene Location: 253546-254274 bp Ori: AJZ56721.1 Feature: domain Description: PHA02517 Location: 253549-254248 bp Feature: domain Description: PHA02 517 Location: 2 53549-2 542 48 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IstB_IS21 (pfam01695), COG4584 (Transposase ), RVT-GII, GIIM (pfam08388), InsE (COG2963), PHA02517 (putative transposase OrfB; Reviewed)

Seq: CP010026.1 Paraburkholderia fungorum strain ATCC BAA-463 chromosome 1, complete sequence (4463161 bp)
Overview 1 RT 1: 1603686-1612097 bp 2 RT 2: 2193549-2202352 bp Neighborhood of RT #1 [1603686, 1612708] 2A0305 GlxA GyrI-like RVT-Retrons DUF2235 Resolvase Recombinase Neighborhood of RT #2 [2193549, 2202354] LpxC DciA RVT_N RVT-GII GIIM HNHc PRK12904 argJ Feature: gene Location: 1603686-1605089 bp Ori: AJZ57581.1 Gene: eat Feature: domain Description: 2A0305 Location: 1603731-1605075 bp Feature: domain Description: 2A03 05 Location: 1603 73 1-1605075 bp Feature: gene Location: 1605345-1606211 bp Ori: AJZ59303.1 Feature: domain Description: GlxA Location: 1605369-1605690 bp Feature: domain Description: GlxA Location: 16053 69-1605690 bp Feature: domain Description: GyrI-like Location: 1605744-1606206 bp Feature: domain Description: GyrI-like Location: 1605744-1606206 bp Feature: gene Location: 1606940-1608232 bp Ori: AJZ58628.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1607357-1607996 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 16073 57-1607996 bp Feature: gene Location: 1608371-1609663 bp Ori: AJZ57792.1 Feature: domain Description: DUF2235 Location: 1608530-1608881 bp Feature: domain Description: DUF223 5 Location: 160853 0-1608881 bp Feature: gene Location: 1611215-1612708 bp Ori: AJZ57660.1 Feature: domain Description: Resolvase Location: 1611218-1611647 bp Feature: domain Description: Resolvase Location: 1611218-1611647 bp Feature: domain Description: Recombinase Location: 1611788-1612097 bp Feature: domain Description: Recombinase Location: 1611788-1612097 bp Feature: gene Location: 2193549-2194466 bp Ori: AJZ60689.1 Gene: lpxC Feature: domain Description: LpxC Location: 2193552-2194431 bp Feature: domain Description: LpxC Location: 2193 552-219443 1 bp Feature: gene Location: 2194548-2195033 bp Ori: AJZ57461.1 Feature: domain Description: DciA Location: 2194617-2194872 bp Feature: domain Description: DciA Location: 2194617-2194872 bp Feature: gene Location: 2196249-2197949 bp Ori: AJZ59576.1 Gene: ltrA Feature: domain Description: RVT_N Location: 2196306-2196543 bp Feature: domain Description: RVT_N Location: 21963 06-2196543 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2196594-2197242 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2196594-2197242 bp Feature: domain Description: GIIM Note: maturase Location: 2197296-2197527 bp Feature: domain Description: GIIM Note: maturase Location: 2197296-2197527 bp Feature: domain Description: HNHc Note: nucleases Location: 2197743-2197911 bp Feature: domain Description: HNHc Note: nucleases Location: 2197743 -2197911 bp Feature: gene Location: 2198151-2200961 bp Ori: AJZ58560.1 Gene: secA Feature: domain Description: PRK12904 Location: 2198163-2200953 bp Feature: domain Description: PRK12904 Location: 2198163 -2200953 bp Feature: gene Location: 2201113-2202354 bp Ori: AJZ58512.1 Gene: argJ Feature: domain Description: argJ Location: 2201152-2202352 bp Feature: domain Description: argJ Location: 2201152-22023 52 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT 2A0305 (TIGR00908), GlxA (COG4977), GyrI-like (pfam06445), RVT-Retrons, DUF2235 (pfam09994), Resolvase (smart00857), Recombinase (pfam07508), LpxC (pfam03331), DciA, RVT_N (pfam13655)
RVT-GII, GIIM (pfam08388), HNHc (smart00507), PRK12904 (preprotein translocase subunit SecA; Reviewed), argJ (PRK05388)