myRT

myRT report for GCA_000967155.1_HUSEC2011CHR1

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Seq: HF572917.2 Escherichia coli HUSEC2011 complete genome (5277676 bp)
Overview 1 RT 1: 3525042-3529043 bp 2 RT 2: 3538497-3548954 bp 3 RT 3: 4947486-4953516 bp 4 RT 4: 4967473-4975186 bp 5 RT 5: 5167576-5172549 bp Neighborhood of RT #1 [3525042, 3529043] PHA02517 YkfC RVT-GII RVT-GII GIIM PHA02517 Neighborhood of RT #2 [3538497, 3549007] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 VI_ClpV1 Neighborhood of RT #3 [4947486, 4953518] InsE PHA02517 RVT-GII GIIM PHA02517 TonB-siderophor Neighborhood of RT #4 [4967473, 4975188] Peptidase_S6 autotrans_barl PHA02517 RVT-GII GIIM PHA02517 InsE Neighborhood of RT #5 [5167576, 5172551] InsE PHA02517 RVT-GII GIIM fecE Feature: gene Location: 3525042-3525281 bp Ori: CCQ30401.2 Feature: domain Description: PHA02517 Location: 3525045-3525216 bp Feature: domain Description: PHA0251 7 Location: 3525045-352521 6 bp Feature: gene Location: 3525873-3526082 bp Ori: CCQ30402.2 Feature: domain Description: YkfC Location: 3525882-3526074 bp Feature: domain Description: YkfC Location: 3525882-3526074 bp Feature: gene Location: 3526122-3526283 bp Ori: CCQ30403.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3526146-3526257 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35261 46-3526257 bp Feature: gene Location: 3526312-3527397 bp Ori: CCQ30404.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3526345-3526879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3526345-3526879 bp Feature: domain Description: GIIM Note: maturase Location: 3526954-3527152 bp Feature: domain Description: GIIM Note: maturase Location: 3526954-35271 52 bp Feature: gene Location: 3527589-3527960 bp Ori: CCQ30405.2 Feature: domain Description: PHA02517 Location: 3527592-3527958 bp Feature: domain Description: PHA0251 7 Location: 3527592-3527958 bp Feature: gene Location: 3528927-3529043 bp Feature: gene Location: 3538497-3541832 bp Ori: CCQ30418.2 Feature: domain Description: Peptidase_S6 Location: 3538500-3540039 bp Feature: domain Description: Peptidase_S6 Location: 3538500-3540039 bp Feature: domain Description: autotrans_barl Location: 3540603-3541830 bp Feature: domain Description: autotrans_barl Location: 3540603-3541 830 bp Feature: gene Location: 3542780-3543151 bp Ori: CCQ30419.2 Feature: domain Description: PHA02517 Location: 3542783-3543149 bp Feature: domain Description: PHA0251 7 Location: 3542783-35431 49 bp Feature: gene Location: 3543343-3544866 bp Ori: CCQ30420.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3543616-3544348 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 354361 6-3544348 bp Feature: domain Description: GIIM Note: maturase Location: 3544423-3544621 bp Feature: domain Description: GIIM Note: maturase Location: 3544423-3544621 bp Feature: gene Location: 3545458-3546021 bp Ori: CCQ30421.2 Feature: domain Description: PHA02517 Location: 3545602-3545956 bp Feature: domain Description: PHA0251 7 Location: 3545602-3545956 bp Feature: gene Location: 3546458-3549007 bp Ori: CCQ30422.2 Feature: domain Description: VI_ClpV1 Location: 3546494-3548954 bp Feature: domain Description: VI_ClpV1 Location: 3546494-3548954 bp Feature: gene Location: 4947486-4947761 bp Ori: CCQ31793.2 Feature: domain Description: InsE Location: 4947507-4947759 bp Feature: domain Description: InsE Location: 4947507-4947759 bp Feature: gene Location: 4947761-4948240 bp Ori: CCQ31794.2 Feature: domain Description: PHA02517 Location: 4947821-4948175 bp Feature: domain Description: PHA0251 7 Location: 4947821 -49481 75 bp Feature: gene Location: 4948832-4950355 bp Ori: CCQ31795.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4949105-4949837 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 49491 05-4949837 bp Feature: domain Description: GIIM Note: maturase Location: 4949912-4950110 bp Feature: domain Description: GIIM Note: maturase Location: 494991 2-49501 1 0 bp Feature: gene Location: 4950547-4950918 bp Ori: CCQ31796.2 Feature: domain Description: PHA02517 Location: 4950550-4950916 bp Feature: domain Description: PHA0251 7 Location: 4950550-495091 6 bp Feature: gene Location: 4951320-4953518 bp Ori: CCQ31797.2 Feature: domain Description: TonB-siderophor Location: 4951455-4953516 bp Feature: domain Description: TonB-siderophor Location: 4951 455-495351 6 bp Feature: gene Location: 4967473-4970808 bp Ori: CCQ31814.2 Gene: pic Feature: domain Description: Peptidase_S6 Location: 4967476-4969015 bp Feature: domain Description: Peptidase_S6 Location: 4967476-496901 5 bp Feature: domain Description: autotrans_barl Location: 4969579-4970806 bp Feature: domain Description: autotrans_barl Location: 4969579-4970806 bp Feature: gene Location: 4971756-4972127 bp Ori: CCQ31815.2 Feature: domain Description: PHA02517 Location: 4971759-4972125 bp Feature: domain Description: PHA0251 7 Location: 4971 759-49721 25 bp Feature: gene Location: 4972319-4973842 bp Ori: CCQ31816.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4972592-4973324 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4972592-4973324 bp Feature: domain Description: GIIM Note: maturase Location: 4973399-4973597 bp Feature: domain Description: GIIM Note: maturase Location: 4973399-4973597 bp Feature: gene Location: 4974434-4974913 bp Ori: CCQ31817.2 Feature: domain Description: PHA02517 Location: 4974494-4974848 bp Feature: domain Description: PHA0251 7 Location: 4974494-4974848 bp Feature: gene Location: 4974913-4975188 bp Ori: CCQ31818.2 Feature: domain Description: InsE Location: 4974934-4975186 bp Feature: domain Description: InsE Location: 4974934-49751 86 bp Feature: gene Location: 5167576-5167878 bp Ori: CCQ32021.2 Feature: domain Description: InsE Location: 5167615-5167864 bp Feature: domain Description: InsE Location: 51 6761 5-51 67864 bp Feature: gene Location: 5167934-5168359 bp Ori: CCQ32022.2 Feature: domain Description: PHA02517 Location: 5167958-5168294 bp Feature: domain Description: PHA0251 7 Location: 51 67958-51 68294 bp Feature: gene Location: 5168951-5170474 bp Ori: CCQ32023.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5169224-5169956 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 69224-51 69956 bp Feature: domain Description: GIIM Note: maturase Location: 5170031-5170229 bp Feature: domain Description: GIIM Note: maturase Location: 51 70031 -51 70229 bp Feature: gene Location: 5171239-5171382 bp Feature: gene Location: 5171940-5172551 bp Ori: CCQ32025.2 Feature: domain Description: fecE Location: 5171943-5172549 bp Feature: domain Description: fecE Location: 51 71 943-51 72549 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), YkfC (COG3344), RVT-GII, GIIM (pfam08388), Peptidase_S6 (pfam02395), autotrans_barl (TIGR01414), VI_ClpV1 (TIGR03345), InsE (COG2963), TonB-siderophor (TIGR01783), fecE (PRK11231)

Seq: HE610901.2 Escherichia coli HUSEC2011 plasmid pHUSEC2011-2 complete sequence (75569 bp)
Overview 1 RT 1: 44341-47962 bp Neighborhood of RT #1 [44341, 47967] PHA02517 RVT-GII GIIM InsG YkfC Feature: gene Location: 44341-44547 bp Feature: gene Location: 44531-44977 bp Ori: CCE57679.2 Feature: domain Description: PHA02517 Location: 44534-44975 bp Feature: domain Description: PHA02 517 Location: 44534-44975 bp Feature: gene Location: 45094-46440 bp Ori: CCE57680.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45190-45922 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 45190-4592 2 bp Feature: domain Description: GIIM Note: maturase Location: 45997-46195 bp Feature: domain Description: GIIM Note: maturase Location: 45997-46195 bp Feature: gene Location: 46533-47645 bp Ori: CCE57681.2 Feature: domain Description: InsG Location: 46536-47574 bp Feature: domain Description: InsG Location: 46536-47574 bp Feature: gene Location: 47812-47967 bp Ori: CCE57682.2 Feature: domain Description: YkfC Location: 47821-47962 bp Feature: domain Description: YkfC Location: 4782 1-47962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388), InsG (COG3385), YkfC (COG3344)