myRT

myRT report for GCA_000967895.1_ASM96789v1

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Seq: FO203512.1 Oleispira antarctica strain RB-8, complete genome sequence (4406383 bp)
Overview 1 RT 1: 1770253-1773461 bp 2 RT 2: 1880507-1886142 bp 3 RT 3: 2407684-2412681 bp 4 RT 4: 2786134-2791378 bp 5 RT 5: 3140415-3147004 bp Neighborhood of RT #1 [1770253, 1773461] RVT-GII GIIM Neighborhood of RT #2 [1880507, 1886564] TnpB_IS66 RVT-GII GIIM RVT-GII RVT-GII GIIM S_2TMBeta NT_2-5OAS_ClassI-CCAase Neighborhood of RT #3 [2407684, 2412681] PRK15442 RVT-GII GIIM Neighborhood of RT #4 [2786134, 2791458] Transposase_mut RVT-UG17 LZ_Tnp_IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C TnpB_IS66 Neighborhood of RT #5 [3140415, 3147033] HflX RVT-GII GIIM DUF772 DDE_Tnp_1_6 Feature: gene Location: 1770253-1770732 bp Feature: gene Location: 1770892-1771173 bp Feature: gene Location: 1771281-1772573 bp Ori: CCK75788.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1771539-1772157 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 771 539-1 7721 57 bp Feature: domain Description: GIIM Note: maturase Location: 1772208-1772418 bp Feature: domain Description: GIIM Note: maturase Location: 1 772208-1 77241 8 bp Feature: gene Location: 1772679-1773047 bp Feature: gene Location: 1773099-1773461 bp Feature: gene Location: 1880507-1880872 bp Ori: CCK75888.1 Feature: domain Description: TnpB_IS66 Location: 1880534-1880828 bp Feature: domain Description: TnpB_IS66 Location: 1 880534-1 880828 bp Feature: gene Location: 1880869-1881198 bp Feature: gene Location: 1881242-1882399 bp Ori: CCK75890.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1881521-1882139 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 881 521 -1 8821 39 bp Feature: domain Description: GIIM Note: maturase Location: 1882181-1882385 bp Feature: domain Description: GIIM Note: maturase Location: 1 8821 81 -1 882385 bp Feature: gene Location: 1883448-1883891 bp Ori: CCK75891.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1883706-1883871 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 883706-1 883871 bp Feature: gene Location: 1883942-1884724 bp Ori: CCK75892.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1883945-1884308 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 883945-1 884308 bp Feature: domain Description: GIIM Note: maturase Location: 1884359-1884569 bp Feature: domain Description: GIIM Note: maturase Location: 1 884359-1 884569 bp Feature: gene Location: 1884841-1885440 bp Ori: CCK75893.1 Feature: domain Description: S_2TMBeta Location: 1884898-1885429 bp Feature: domain Description: S_2TMBeta Location: 1 884898-1 885429 bp Feature: gene Location: 1885437-1886564 bp Ori: CCK75894.1 Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 1885677-1886142 bp Feature: domain Description: NT_2-5OAS_ClassI-CCAase Location: 1 885677-1 8861 42 bp Feature: gene Location: 2407684-2408556 bp Ori: CCK76363.1 Gene: carB Feature: domain Description: PRK15442 Location: 2407729-2408539 bp Feature: domain Description: PRK1 5442 Location: 2407729-2408539 bp Feature: gene Location: 2408817-2409464 bp Feature: gene Location: 2409605-2410894 bp Ori: CCK76365.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2409860-2410529 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2409860-241 0529 bp Feature: domain Description: GIIM Note: maturase Location: 2410622-2410811 bp Feature: domain Description: GIIM Note: maturase Location: 241 0622-241 081 1 bp Feature: gene Location: 2411556-2412125 bp Feature: gene Location: 2412211-2412681 bp Feature: gene Location: 2786134-2787378 bp Ori: CCK76676.1 Feature: domain Description: Transposase_mut Location: 2786182-2787283 bp Feature: domain Description: Transposase_mut Location: 27861 82-2787283 bp Feature: gene Location: 2787551-2787934 bp Feature: gene Location: 2788196-2789482 bp Ori: CCK76678.1 Feature: RT Description: RVT-UG17 Note: UG17 RT Location: 2788412-2788982 bp Feature: RT Description: RVT-UG1 7 Note: UG1 7 RT Location: 278841 2-2788982 bp Feature: gene Location: 2789487-2791010 bp Ori: CCK76679.1 Feature: domain Description: LZ_Tnp_IS66 Location: 2789529-2789703 bp Feature: domain Description: LZ_Tnp_IS66 Location: 2789529-2789703 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2789958-2790804 bp Feature: domain Description: DDE_Tnp_IS66 Location: 2789958-2790804 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2790825-2790933 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 2790825-2790933 bp Feature: gene Location: 2791060-2791458 bp Ori: CCK76680.1 Feature: domain Description: TnpB_IS66 Location: 2791087-2791378 bp Feature: domain Description: TnpB_IS66 Location: 2791 087-2791 378 bp Feature: gene Location: 3140415-3141761 bp Ori: CCK76966.1 Feature: domain Description: HflX Location: 3140448-3141744 bp Feature: domain Description: HflX Location: 31 40448-31 41 744 bp Feature: gene Location: 3142187-3142426 bp Feature: gene Location: 3143177-3144526 bp Ori: CCK76968.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3143456-3144089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 31 43456-31 44089 bp Feature: domain Description: GIIM Note: maturase Location: 3144131-3144356 bp Feature: domain Description: GIIM Note: maturase Location: 31 441 31 -31 44356 bp Feature: gene Location: 3144595-3145272 bp Feature: gene Location: 3145477-3147033 bp Ori: CCK76970.1 Feature: domain Description: DUF772 Location: 3145642-3145849 bp Feature: domain Description: DUF772 Location: 31 45642-31 45849 bp Feature: domain Description: DDE_Tnp_1_6 Location: 3146617-3147004 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 31 4661 7-31 47004 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, GIIM (pfam08388), TnpB_IS66 (pfam05717), S_2TMBeta (pfam18153), NT_2-5OAS_ClassI-CCAase (cd05400), PRK15442 (beta-lactamase TEM; Provisional), Transposase_mut (pfam00872), RVT-UG17, LZ_Tnp_IS66 (pfam13007), DDE_Tnp_IS66 (pfam03050)
DDE_Tnp_IS66_C (pfam13817), HflX (COG2262), DUF772 (pfam05598), DDE_Tnp_1_6 (pfam13751)