myRT

myRT report for GCA_000969905.1_ASM96990v1

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Seq: CP009520.1 Methanosarcina vacuolata Z-761, complete genome (4505752 bp)
Overview 1 RT 1: 290929-295794 bp 2 RT 2: 2079022-2085883 bp 3 RT 3: 3641398-3646092 bp Neighborhood of RT #1 [290929, 296342] RVT-CRISPR Cas6b_N Cas6b_C Cmr1_III-B Neighborhood of RT #2 [2079022, 2086371] AcyP RVT_N RVT-GII GIIM HNHc COG1787 7WD40 WD40 7WD40 Neighborhood of RT #3 [3641398, 3646148] COG5421 COG5421 RVT_N RVT-GII GIIM COG5421 Feature: gene Location: 290929-291180 bp Feature: gene Location: 291346-291543 bp Feature: gene Location: 293191-294351 bp Ori: AKB42524.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 293440-294061 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 293440-294061 bp Feature: gene Location: 294412-295188 bp Ori: AKB42525.1 Feature: domain Description: Cas6b_N Location: 294511-294811 bp Feature: domain Description: Cas6b_N Location: 29451 1 -29481 1 bp Feature: domain Description: Cas6b_C Location: 294823-295156 bp Feature: domain Description: Cas6b_C Location: 294823-2951 56 bp Feature: gene Location: 295242-296342 bp Ori: AKB42526.1 Feature: domain Description: Cmr1_III-B Location: 295257-295794 bp Feature: domain Description: Cmr1 _III-B Location: 295257-295794 bp Feature: gene Location: 2079022-2079300 bp Ori: AKB43904.1 Feature: domain Description: AcyP Location: 2079037-2079286 bp Feature: domain Description: AcyP Location: 2079037-2079286 bp Feature: gene Location: 2079535-2079720 bp Feature: gene Location: 2079713-2081521 bp Ori: AKB43906.1 Feature: domain Description: RVT_N Location: 2079884-2080124 bp Feature: domain Description: RVT_N Location: 2079884-20801 24 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2080175-2080832 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 20801 75-2080832 bp Feature: domain Description: GIIM Note: maturase Location: 2080883-2081117 bp Feature: domain Description: GIIM Note: maturase Location: 2080883-2081 1 1 7 bp Feature: domain Description: HNHc Note: nucleases Location: 2081303-2081465 bp Feature: domain Description: HNHc Note: nucleases Location: 2081 303-2081 465 bp Feature: gene Location: 2082638-2083303 bp Ori: AKB43907.1 Feature: domain Description: COG1787 Location: 2082851-2083289 bp Feature: domain Description: COG1 787 Location: 2082851 -2083289 bp Feature: gene Location: 2084911-2086371 bp Ori: AKB43908.1 Feature: domain Description: 7WD40 Location: 2085010-2085283 bp Feature: domain Description: 7WD40 Location: 208501 0-2085283 bp Feature: domain Description: WD40 Location: 2085283-2085391 bp Feature: domain Description: WD40 Location: 2085283-2085391 bp Feature: domain Description: 7WD40 Location: 2085550-2085883 bp Feature: domain Description: 7WD40 Location: 2085550-2085883 bp Feature: gene Location: 3641398-3641868 bp Ori: AKB45094.1 Feature: domain Description: COG5421 Location: 3641626-3641866 bp Feature: domain Description: COG5421 Location: 3641 626-3641 866 bp Feature: gene Location: 3641947-3642216 bp Ori: AKB45095.1 Feature: domain Description: COG5421 Location: 3641950-3642175 bp Feature: domain Description: COG5421 Location: 3641 950-36421 75 bp Feature: gene Location: 3642345-3643838 bp Ori: AKB45096.1 Feature: domain Description: RVT_N Location: 3642450-3642687 bp Feature: domain Description: RVT_N Location: 3642450-3642687 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3642738-3643374 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3642738-3643374 bp Feature: domain Description: GIIM Note: maturase Location: 3643425-3643659 bp Feature: domain Description: GIIM Note: maturase Location: 3643425-3643659 bp Feature: gene Location: 3644672-3644800 bp Feature: gene Location: 3645201-3646148 bp Ori: AKB45098.1 Feature: domain Description: COG5421 Location: 3645222-3646092 bp Feature: domain Description: COG5421 Location: 3645222-3646092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1_III-B (cd09657), AcyP (COG1254), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), COG1787 (Endonuclease, HJR/Mrr/RecB family )
7WD40 (sd00039), WD40 (smart00320), COG5421 (Transposase )