myRT

myRT report for GCA_000969945.1_ASM96994v1

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Seq: CP009524.1 Methanosarcina sp. Kolksee, complete genome (4499114 bp)
Overview 1 RT 1: 534222-543995 bp 2 RT 2: 984280-992815 bp 3 RT 3: 1839000-1844224 bp 4 RT 4: 2030561-2037542 bp Neighborhood of RT #1 [534222, 543995] PolB COG5421 RVT-Retrons Peptidase_A24 Arc_PepC_II Neighborhood of RT #2 [984280, 992835] GT4_MtfB-like COG4906 RVT_N RVT-GII GIIM COG3666 COG3464 Neighborhood of RT #3 [1839000, 1844244] PRK01889 RVT-Retrons CatA Neighborhood of RT #4 [2030561, 2037910] AcyP RVT_N RVT-GII GIIM HNHc COG1787 7WD40 7WD40 Feature: gene Location: 534222-537011 bp Ori: AKB46227.1 Feature: domain Description: PolB Location: 534231-536868 bp Feature: domain Description: PolB Location: 534231 -536868 bp Feature: gene Location: 538213-539631 bp Ori: AKB46228.1 Feature: domain Description: COG5421 Location: 538717-539194 bp Feature: domain Description: COG5421 Location: 53871 7-5391 94 bp Feature: gene Location: 539809-541434 bp Ori: AKB46229.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 540019-540574 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 54001 9-540574 bp Feature: gene Location: 542028-542792 bp Ori: AKB46230.1 Feature: domain Description: Peptidase_A24 Location: 542058-542367 bp Feature: domain Description: Peptidase_A24 Location: 542058-542367 bp Feature: domain Description: Arc_PepC_II Location: 542478-542757 bp Feature: domain Description: Arc_PepC_II Location: 542478-542757 bp Feature: gene Location: 543015-543995 bp Feature: gene Location: 984280-985398 bp Ori: AKB46557.1 Feature: domain Description: GT4_MtfB-like Location: 984289-985372 bp Feature: domain Description: GT4_MtfB-like Location: 984289-985372 bp Feature: gene Location: 986516-988753 bp Ori: AKB46558.1 Feature: domain Description: COG4906 Location: 986573-988745 bp Feature: domain Description: COG4906 Location: 986573-988745 bp Feature: gene Location: 989386-990930 bp Ori: AKB46559.1 Feature: domain Description: RVT_N Location: 989542-989779 bp Feature: domain Description: RVT_N Location: 989542-989779 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989830-990466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 989830-990466 bp Feature: domain Description: GIIM Note: maturase Location: 990517-990751 bp Feature: domain Description: GIIM Note: maturase Location: 99051 7-990751 bp Feature: gene Location: 991718-991903 bp Ori: AKB46560.1 Feature: domain Description: COG3666 Location: 991724-991898 bp Feature: domain Description: COG3666 Location: 991 724-991 898 bp Feature: gene Location: 992032-992835 bp Ori: AKB46561.1 Feature: domain Description: COG3464 Location: 992035-992815 bp Feature: domain Description: COG3464 Location: 992035-99281 5 bp Feature: gene Location: 1839000-1840091 bp Ori: AKB47202.1 Feature: domain Description: PRK01889 Location: 1839054-1840074 bp Feature: domain Description: PRK01 889 Location: 1 839054-1 840074 bp Feature: gene Location: 1840311-1840619 bp Feature: gene Location: 1840813-1842531 bp Ori: AKB47204.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1841065-1841617 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 1 841 065-1 841 61 7 bp Feature: gene Location: 1843093-1843872 bp Feature: gene Location: 1844077-1844244 bp Ori: AKB47206.1 Feature: domain Description: CatA Location: 1844083-1844224 bp Feature: domain Description: CatA Location: 1 844083-1 844224 bp Feature: gene Location: 2030561-2030839 bp Ori: AKB47342.1 Feature: domain Description: AcyP Location: 2030576-2030825 bp Feature: domain Description: AcyP Location: 2030576-2030825 bp Feature: gene Location: 2031074-2031259 bp Feature: gene Location: 2031252-2033045 bp Ori: AKB47344.1 Feature: domain Description: RVT_N Location: 2031408-2031648 bp Feature: domain Description: RVT_N Location: 2031 408-2031 648 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031699-2032356 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2031 699-2032356 bp Feature: domain Description: GIIM Note: maturase Location: 2032407-2032641 bp Feature: domain Description: GIIM Note: maturase Location: 2032407-2032641 bp Feature: domain Description: HNHc Note: nucleases Location: 2032827-2032989 bp Feature: domain Description: HNHc Note: nucleases Location: 2032827-2032989 bp Feature: gene Location: 2034177-2034842 bp Ori: AKB47345.1 Feature: domain Description: COG1787 Location: 2034390-2034828 bp Feature: domain Description: COG1 787 Location: 2034390-2034828 bp Feature: gene Location: 2036450-2037910 bp Ori: AKB47346.1 Feature: domain Description: 7WD40 Location: 2036615-2037287 bp Feature: domain Description: 7WD40 Location: 203661 5-2037287 bp Feature: domain Description: 7WD40 Location: 2037329-2037542 bp Feature: domain Description: 7WD40 Location: 2037329-2037542 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PolB (COG0417), COG5421 (Transposase ), RVT-Retrons, Peptidase_A24 (pfam01478), Arc_PepC_II (pfam06847), GT4_MtfB-like (cd03809), COG4906 (Uncharacterized membrane protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388)
COG3666 (Transposase ), COG3464 (Transposase ), PRK01889 (GTPase RsgA; Reviewed), CatA (COG4845), AcyP (COG1254), HNHc (smart00507), COG1787 (Endonuclease, HJR/Mrr/RecB family ), 7WD40 (sd00039)