myRT

myRT report for GCA_000969985.1_ASM96998v1

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Seq: CP009526.1 Methanosarcina barkeri str. Wiesmoor, complete genome (4874815 bp)
Overview 1 RT 1: 3937146-3944931 bp 2 RT 2: 4396714-4400581 bp Neighborhood of RT #1 [3937146, 3944969] COG4742 Cupredoxin_Fibrocystin-L_like Cupredoxin_Fibrocystin-L_like RVT_N RVT-GII GIIM AglD2 GT4_PimA-like Neighborhood of RT #2 [4396714, 4400581] Cmr1_III-B Cas6b_N Cas6b_C RVT-CRISPR PRiA4_ORF3 Feature: gene Location: 3937146-3938039 bp Ori: AKB52255.1 Feature: domain Description: COG4742 Location: 3937182-3938019 bp Feature: domain Description: COG4742 Location: 39371 82-393801 9 bp Feature: gene Location: 3938390-3939196 bp Ori: AKB52256.1 Feature: domain Description: Cupredoxin_Fibrocystin-L_like Location: 3938573-3938807 bp Feature: domain Description: Cupredoxin_Fibrocystin-L_like Location: 3938573-3938807 bp Feature: domain Description: Cupredoxin_Fibrocystin-L_like Location: 3938948-3939191 bp Feature: domain Description: Cupredoxin_Fibrocystin-L_like Location: 3938948-39391 91 bp Feature: gene Location: 3940474-3941952 bp Ori: AKB52257.1 Feature: domain Description: RVT_N Location: 3940564-3940807 bp Feature: domain Description: RVT_N Location: 3940564-3940807 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3940852-3941488 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3940852-3941 488 bp Feature: domain Description: GIIM Note: maturase Location: 3941539-3941773 bp Feature: domain Description: GIIM Note: maturase Location: 3941 539-3941 773 bp Feature: gene Location: 3942901-3943863 bp Ori: AKB52258.1 Feature: domain Description: AglD2 Location: 3942928-3943855 bp Feature: domain Description: AglD2 Location: 3942928-3943855 bp Feature: gene Location: 3943839-3944969 bp Ori: AKB52259.1 Feature: domain Description: GT4_PimA-like Location: 3943854-3944931 bp Feature: domain Description: GT4_PimA-like Location: 3943854-3944931 bp Feature: gene Location: 4396714-4397814 bp Ori: AKB52626.1 Feature: domain Description: Cmr1_III-B Location: 4396729-4397266 bp Feature: domain Description: Cmr1 _III-B Location: 4396729-4397266 bp Feature: gene Location: 4397869-4398567 bp Ori: AKB52627.1 Feature: domain Description: Cas6b_N Location: 4397890-4398190 bp Feature: domain Description: Cas6b_N Location: 4397890-43981 90 bp Feature: domain Description: Cas6b_C Location: 4398202-4398535 bp Feature: domain Description: Cas6b_C Location: 4398202-4398535 bp Feature: gene Location: 4398705-4399232 bp Ori: AKB52628.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4398738-4398942 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 4398738-4398942 bp Feature: gene Location: 4399614-4400180 bp Ori: AKB52629.1 Feature: domain Description: PRiA4_ORF3 Location: 4399635-4400163 bp Feature: domain Description: PRiA4_ORF3 Location: 4399635-44001 63 bp Feature: gene Location: 4400381-4400581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG4742 (Predicted transcriptional regulator, contains HTH domain ), Cupredoxin_Fibrocystin-L_like (cd04217), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), AglD2 (COG0392), GT4_PimA-like (cd03801), Cmr1_III-B (cd09657), Cas6b_N (pfam17955), Cas6b_C
RVT-CRISPR, PRiA4_ORF3 (pfam07929)