myRT

myRT report for GCA_000970025.1_ASM97002v1

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Seq: CP009528.1 Methanosarcina barkeri MS, complete genome (4533209 bp)
Overview 1 RT 1: 240648-246717 bp 2 RT 2: 262584-269641 bp 3 RT 3: 418662-426942 bp 4 RT 4: 1034987-1039477 bp Neighborhood of RT #1 [240648, 246731] DUF1887 DUF1887 Cas6b_N Cas6b_C RVT-CRISPR GIIM PRiA4_ORF3 Neighborhood of RT #2 [262584, 269802] DppD DppF RVT_N RVT-GII GIIM beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn beta_rpt_yvtn YncE Neighborhood of RT #3 [418662, 426962] CsdA MULE RVT-UG7 YkgJ PRK08660 Neighborhood of RT #4 [1034987, 1039881] DDE_Tnp_ISAZ013 PRK09183 RVT_N RVT-GII GIIM DnaC COG4584 Feature: gene Location: 240648-241832 bp Ori: AKB53212.1 Feature: domain Description: DUF1887 Location: 240780-241152 bp Feature: domain Description: DUF1 887 Location: 240780-241 1 52 bp Feature: domain Description: DUF1887 Location: 241404-241698 bp Feature: domain Description: DUF1 887 Location: 241 404-241 698 bp Feature: gene Location: 241872-242546 bp Ori: AKB53213.1 Feature: domain Description: Cas6b_N Location: 241893-242193 bp Feature: domain Description: Cas6b_N Location: 241 893-2421 93 bp Feature: domain Description: Cas6b_C Location: 242205-242538 bp Feature: domain Description: Cas6b_C Location: 242205-242538 bp Feature: gene Location: 242683-243777 bp Ori: AKB53214.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 242863-243487 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 242863-243487 bp Feature: domain Description: GIIM Note: maturase Location: 243625-243763 bp Feature: domain Description: GIIM Note: maturase Location: 243625-243763 bp Feature: gene Location: 245694-245945 bp Feature: gene Location: 246333-246731 bp Ori: AKB53216.1 Feature: domain Description: PRiA4_ORF3 Location: 246393-246717 bp Feature: domain Description: PRiA4_ORF3 Location: 246393-24671 7 bp Feature: gene Location: 262584-263642 bp Ori: AKB53221.1 Feature: domain Description: DppD Location: 262719-263625 bp Feature: domain Description: DppD Location: 26271 9-263625 bp Feature: gene Location: 263632-264243 bp Ori: AKB53222.1 Feature: domain Description: DppF Location: 263641-264229 bp Feature: domain Description: DppF Location: 263641 -264229 bp Feature: gene Location: 265239-266717 bp Ori: AKB53223.1 Feature: domain Description: RVT_N Location: 265329-265572 bp Feature: domain Description: RVT_N Location: 265329-265572 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 265617-266253 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 26561 7-266253 bp Feature: domain Description: GIIM Note: maturase Location: 266307-266538 bp Feature: domain Description: GIIM Note: maturase Location: 266307-266538 bp Feature: gene Location: 268273-269802 bp Ori: AKB53224.1 Feature: domain Description: beta_rpt_yvtn Location: 268393-268498 bp Feature: domain Description: beta_rpt_yvtn Location: 268393-268498 bp Feature: domain Description: beta_rpt_yvtn Location: 268504-268624 bp Feature: domain Description: beta_rpt_yvtn Location: 268504-268624 bp Feature: domain Description: beta_rpt_yvtn Location: 268627-268747 bp Feature: domain Description: beta_rpt_yvtn Location: 268627-268747 bp Feature: domain Description: beta_rpt_yvtn Location: 268753-268873 bp Feature: domain Description: beta_rpt_yvtn Location: 268753-268873 bp Feature: domain Description: beta_rpt_yvtn Location: 268879-268993 bp Feature: domain Description: beta_rpt_yvtn Location: 268879-268993 bp Feature: domain Description: beta_rpt_yvtn Location: 268999-269122 bp Feature: domain Description: beta_rpt_yvtn Location: 268999-2691 22 bp Feature: domain Description: beta_rpt_yvtn Location: 269128-269236 bp Feature: domain Description: beta_rpt_yvtn Location: 2691 28-269236 bp Feature: domain Description: YncE Location: 269362-269641 bp Feature: domain Description: YncE Location: 269362-269641 bp Feature: gene Location: 418662-420206 bp Ori: AKB53342.1 Feature: domain Description: CsdA Location: 418728-420141 bp Feature: domain Description: CsdA Location: 41 8728-4201 41 bp Feature: gene Location: 421758-422537 bp Ori: AKB53343.1 Feature: domain Description: MULE Location: 421989-422094 bp Feature: domain Description: MULE Location: 421 989-422094 bp Feature: gene Location: 423009-424610 bp Ori: AKB53344.1 Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 423423-423849 bp Feature: RT Description: RVT-UG7 Note: UG7 RT Location: 423423-423849 bp Feature: gene Location: 425525-426079 bp Ori: AKB53345.1 Feature: domain Description: YkgJ Location: 425591-426038 bp Feature: domain Description: YkgJ Location: 425591 -426038 bp Feature: gene Location: 426393-426962 bp Ori: AKB53346.1 Feature: domain Description: PRK08660 Location: 426396-426942 bp Feature: domain Description: PRK08660 Location: 426396-426942 bp Feature: gene Location: 1034987-1035361 bp Ori: AKB53784.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 1034993-1035311 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 1 034993-1 03531 1 bp Feature: gene Location: 1035452-1035628 bp Ori: AKB53785.1 Feature: domain Description: PRK09183 Location: 1035536-1035611 bp Feature: domain Description: PRK091 83 Location: 1 035536-1 03561 1 bp Feature: gene Location: 1035621-1037429 bp Ori: AKB53786.1 Feature: domain Description: RVT_N Location: 1035792-1036032 bp Feature: domain Description: RVT_N Location: 1 035792-1 036032 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1036083-1036740 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 036083-1 036740 bp Feature: domain Description: GIIM Note: maturase Location: 1036791-1037025 bp Feature: domain Description: GIIM Note: maturase Location: 1 036791 -1 037025 bp Feature: gene Location: 1037939-1038634 bp Ori: AKB53787.1 Feature: domain Description: DnaC Location: 1037942-1038623 bp Feature: domain Description: DnaC Location: 1 037942-1 038623 bp Feature: gene Location: 1038631-1039881 bp Ori: AKB53788.1 Feature: domain Description: COG4584 Location: 1038634-1039477 bp Feature: domain Description: COG4584 Location: 1 038634-1 039477 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT DUF1887 (pfam09002), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR, GIIM (pfam08388), PRiA4_ORF3 (pfam07929), DppD (COG0444), DppF (COG1124), RVT_N (pfam13655), RVT-GII
beta_rpt_yvtn (TIGR02276), YncE (COG3391), CsdA (COG0520), MULE (pfam10551), RVT-UG7, YkgJ (COG0727), PRK08660 (aldolase), DDE_Tnp_ISAZ013 (pfam07592), PRK09183 (transposase/IS protein; Provisional), DnaC (COG1484)
COG4584 (Transposase )