myRT

myRT report for GCA_000970045.1_ASM97004v1

Download annotations/find similar RTs

Seq: CP009505.1 Methanosarcina sp. MTP4, complete genome (4211468 bp)
Overview 1 RT 1: 2366954-2376061 bp 2 RT 2: 3715031-3720733 bp Neighborhood of RT #1 [2366954, 2376075] YkgJ InsQ RVT_N RVT-GII GIIM HNHc CHASE4 HAMP BaeS CHASE4 HAMP PAS_4 BaeS Neighborhood of RT #2 [3715031, 3721131] Cas10_III Cas6b_N Cas6b_C RVT-CRISPR Feature: gene Location: 2366954-2367613 bp Ori: AKB25268.1 Feature: domain Description: YkgJ Location: 2367014-2367392 bp Feature: domain Description: YkgJ Location: 236701 4-2367392 bp Feature: gene Location: 2368359-2368937 bp Ori: AKB25269.1 Feature: domain Description: InsQ Location: 2368401-2368917 bp Feature: domain Description: InsQ Location: 2368401 -236891 7 bp Feature: gene Location: 2369458-2371233 bp Ori: AKB25270.1 Feature: domain Description: RVT_N Location: 2369614-2369857 bp Feature: domain Description: RVT_N Location: 236961 4-2369857 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369905-2370565 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2369905-2370565 bp Feature: domain Description: GIIM Note: maturase Location: 2370619-2370850 bp Feature: domain Description: GIIM Note: maturase Location: 237061 9-2370850 bp Feature: domain Description: HNHc Note: nucleases Location: 2371033-2371198 bp Feature: domain Description: HNHc Note: nucleases Location: 2371 033-2371 1 98 bp Feature: gene Location: 2371607-2373691 bp Ori: AKB25271.1 Feature: domain Description: CHASE4 Location: 2371613-2372366 bp Feature: domain Description: CHASE4 Location: 2371 61 3-2372366 bp Feature: domain Description: HAMP Location: 2372372-2372603 bp Feature: domain Description: HAMP Location: 2372372-2372603 bp Feature: domain Description: BaeS Location: 2372759-2373635 bp Feature: domain Description: BaeS Location: 2372759-2373635 bp Feature: gene Location: 2374069-2376075 bp Ori: AKB25272.1 Feature: domain Description: CHASE4 Location: 2374075-2374792 bp Feature: domain Description: CHASE4 Location: 2374075-2374792 bp Feature: domain Description: HAMP Location: 2374864-2374966 bp Feature: domain Description: HAMP Location: 2374864-2374966 bp Feature: domain Description: PAS_4 Location: 2375020-2375332 bp Feature: domain Description: PAS_4 Location: 2375020-2375332 bp Feature: domain Description: BaeS Location: 2375356-2376061 bp Feature: domain Description: BaeS Location: 2375356-2376061 bp Feature: gene Location: 3715031-3717574 bp Ori: AKB26316.1 Feature: domain Description: Cas10_III Location: 3715070-3717146 bp Feature: domain Description: Cas1 0_III Location: 371 5070-371 71 46 bp Feature: gene Location: 3719129-3719800 bp Ori: AKB26317.1 Feature: domain Description: Cas6b_N Location: 3719132-3719435 bp Feature: domain Description: Cas6b_N Location: 371 91 32-371 9435 bp Feature: domain Description: Cas6b_C Location: 3719447-3719780 bp Feature: domain Description: Cas6b_C Location: 371 9447-371 9780 bp Feature: gene Location: 3719863-3721131 bp Ori: AKB26318.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3720109-3720733 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 37201 09-3720733 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YkgJ (COG0727), InsQ (COG0675), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNHc (smart00507), CHASE4 (pfam05228), HAMP (smart00304), BaeS (COG0642), PAS_4 (pfam08448)
Cas10_III (cl21742), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR