myRT

myRT report for GCA_000970065.1_ASM97006v1

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Seq: CP009530.1 Methanosarcina barkeri 227, complete genome (4447980 bp)
Overview 1 RT 1: 2840951-2847148 bp 2 RT 2: 3237046-3241480 bp 3 RT 3: 3848999-3855398 bp 4 RT 4: 4108835-4115808 bp Neighborhood of RT #1 [2840951, 2847651] PRiA4_ORF3 RVT-CRISPR RVT-CRISPR GIIM Csx1_III-U cas_TM1794_Cmr2 Cas10_III cas_TM1794_Cmr2 Neighborhood of RT #2 [3237046, 3241491] Pentapeptide Pentapeptide Pentapeptide Pentapeptide RVT-GII GIIM RVT_N RVT-GII YhcG YhcG Neighborhood of RT #3 [3848999, 3855472] RVT_N RVT-GII PRK09325 FrhG Neighborhood of RT #4 [4108835, 4115816] GsiA COG5421 RVT_N RVT-GII PcrB rpl40e Feature: gene Location: 2840951-2841385 bp Ori: AKB58677.1 Feature: domain Description: PRiA4_ORF3 Location: 2840954-2841371 bp Feature: domain Description: PRiA4_ORF3 Location: 2840954-2841 371 bp Feature: gene Location: 2841773-2842024 bp Feature: gene Location: 2843847-2844110 bp Ori: AKB58679.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2843994-2844108 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2843994-28441 08 bp Feature: gene Location: 2844494-2844904 bp Ori: AKB58680.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2844497-2844614 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2844497-284461 4 bp Feature: domain Description: GIIM Note: maturase Location: 2844752-2844896 bp Feature: domain Description: GIIM Note: maturase Location: 2844752-2844896 bp Feature: gene Location: 2845135-2845944 bp Ori: AKB58681.1 Feature: domain Description: Csx1_III-U Location: 2845696-2845894 bp Feature: domain Description: Csx1 _III-U Location: 2845696-2845894 bp Feature: gene Location: 2846038-2847651 bp Ori: AKB58682.1 Feature: domain Description: cas_TM1794_Cmr2 Location: 2846059-2846158 bp Feature: domain Description: cas_TM1 794_Cmr2 Location: 2846059-28461 58 bp Feature: domain Description: Cas10_III Location: 2846263-2846485 bp Feature: domain Description: Cas1 0_III Location: 2846263-2846485 bp Feature: domain Description: cas_TM1794_Cmr2 Location: 2846725-2847148 bp Feature: domain Description: cas_TM1 794_Cmr2 Location: 2846725-28471 48 bp Feature: gene Location: 3237046-3237864 bp Ori: AKB58982.1 Feature: domain Description: Pentapeptide Location: 3237094-3237184 bp Feature: domain Description: Pentapeptide Location: 3237094-32371 84 bp Feature: domain Description: Pentapeptide Location: 3237262-3237361 bp Feature: domain Description: Pentapeptide Location: 3237262-3237361 bp Feature: domain Description: Pentapeptide Location: 3237382-3237460 bp Feature: domain Description: Pentapeptide Location: 3237382-3237460 bp Feature: domain Description: Pentapeptide Location: 3237574-3237688 bp Feature: domain Description: Pentapeptide Location: 3237574-3237688 bp Feature: gene Location: 3238104-3238421 bp Feature: gene Location: 3239019-3239702 bp Ori: AKB58984.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3239043-3239238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3239043-3239238 bp Feature: domain Description: GIIM Note: maturase Location: 3239292-3239523 bp Feature: domain Description: GIIM Note: maturase Location: 3239292-3239523 bp Feature: gene Location: 3239689-3240495 bp Ori: AKB58985.1 Feature: domain Description: RVT_N Location: 3239779-3240022 bp Feature: domain Description: RVT_N Location: 3239779-3240022 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3240067-3240466 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3240067-3240466 bp Feature: gene Location: 3241101-3241376 bp Ori: AKB58986.1 Feature: domain Description: YhcG Location: 3241116-3241335 bp Feature: domain Description: YhcG Location: 3241 1 1 6-3241 335 bp Feature: gene Location: 3241336-3241491 bp Ori: AKB58987.1 Feature: domain Description: YhcG Location: 3241339-3241480 bp Feature: domain Description: YhcG Location: 3241 339-3241 480 bp Feature: gene Location: 3848999-3850582 bp Feature: gene Location: 3850787-3852382 bp Feature: gene Location: 3852993-3853871 bp Ori: AKB59490.1 Feature: domain Description: RVT_N Location: 3853083-3853326 bp Feature: domain Description: RVT_N Location: 3853083-3853326 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3853371-3853815 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3853371 -385381 5 bp Feature: gene Location: 3854248-3855123 bp Ori: AKB59491.1 Feature: domain Description: PRK09325 Location: 3854266-3855097 bp Feature: domain Description: PRK09325 Location: 3854266-3855097 bp Feature: gene Location: 3855116-3855472 bp Ori: AKB59492.1 Feature: domain Description: FrhG Location: 3855128-3855398 bp Feature: domain Description: FrhG Location: 38551 28-3855398 bp Feature: gene Location: 4108835-4110589 bp Ori: AKB59723.1 Feature: domain Description: GsiA Location: 4108838-4110563 bp Feature: domain Description: GsiA Location: 41 08838-41 1 0563 bp Feature: gene Location: 4110943-4112418 bp Ori: AKB59724.1 Feature: domain Description: COG5421 Location: 4110958-4112392 bp Feature: domain Description: COG5421 Location: 41 1 0958-41 1 2392 bp Feature: gene Location: 4112916-4114094 bp Ori: AKB59725.1 Feature: domain Description: RVT_N Location: 4113006-4113249 bp Feature: domain Description: RVT_N Location: 41 1 3006-41 1 3249 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4113294-4113930 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 41 1 3294-41 1 3930 bp Feature: gene Location: 4114917-4115660 bp Ori: AKB59726.1 Feature: domain Description: PcrB Location: 4114926-4115652 bp Feature: domain Description: PcrB Location: 41 1 4926-41 1 5652 bp Feature: gene Location: 4115667-4115816 bp Ori: AKB59727.1 Feature: domain Description: rpl40e Location: 4115670-4115808 bp Feature: domain Description: rpl40e Location: 41 1 5670-41 1 5808 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRiA4_ORF3 (pfam07929), RVT-CRISPR, GIIM (pfam08388), Csx1_III-U (cl21570), cas_TM1794_Cmr2 (TIGR02577), Cas10_III (cl21742), Pentapeptide (pfam00805), RVT-GII, RVT_N (pfam13655), YhcG (COG4804)
PRK09325 (coenzyme F420-reducing hydrogenase subunit beta; Validated), FrhG (TIGR03294), GsiA (COG1123), COG5421 (Transposase ), PcrB (pfam01884), rpl40e (PRK04136)