myRT

myRT report for GCA_000970085.1_ASM97008v1

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Seq: CP009506.1 Methanosarcina siciliae T4/M, complete genome (5017558 bp)
Overview 1 RT 1: 495069-505296 bp 2 RT 2: 512253-517451 bp 3 RT 3: 2335619-2338405 bp 4 RT 4: 4326133-4333687 bp 5 RT 5: 4751605-4757011 bp Neighborhood of RT #1 [495069, 505391] SUL1 BDS1 RVT_N RVT-GII GIIM YrhK YrhK YrhK NHL_like_2 NHL Neighborhood of RT #2 [512253, 517504] COG5421 RVT_N RVT-GII GIIM COG4185 COG4185 Neighborhood of RT #3 [2335619, 2338704] Cmr1_III-B Cas6b_N Cas6b_C RVT-CRISPR Neighborhood of RT #4 [4326133, 4333695] PepP RVT_N RVT-GII COG3666 DDE_Tnp_1_6 UPF0228 Neighborhood of RT #5 [4751605, 4757058] DnaC RVT-GII GIIM RVT_N COG5421 Feature: gene Location: 495069-496514 bp Ori: AKB27141.1 Feature: domain Description: SUL1 Location: 495075-496398 bp Feature: domain Description: SUL1 Location: 495075-496398 bp Feature: gene Location: 496897-498804 bp Ori: AKB27142.1 Feature: domain Description: BDS1 Location: 496906-498802 bp Feature: domain Description: BDS1 Location: 496906-498802 bp Feature: gene Location: 500453-501697 bp Ori: AKB27143.1 Feature: domain Description: RVT_N Location: 500522-500762 bp Feature: domain Description: RVT_N Location: 500522-500762 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 500810-501431 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 50081 0-501 431 bp Feature: domain Description: GIIM Note: maturase Location: 501482-501689 bp Feature: domain Description: GIIM Note: maturase Location: 501 482-501 689 bp Feature: gene Location: 502591-503463 bp Ori: AKB27144.1 Feature: domain Description: YrhK Location: 502819-502951 bp Feature: domain Description: YrhK Location: 50281 9-502951 bp Feature: domain Description: YrhK Location: 503167-503344 bp Feature: domain Description: YrhK Location: 5031 67-503344 bp Feature: domain Description: YrhK Location: 503371-503446 bp Feature: domain Description: YrhK Location: 503371 -503446 bp Feature: gene Location: 504429-505391 bp Ori: AKB27145.1 Feature: domain Description: NHL_like_2 Location: 504468-505191 bp Feature: domain Description: NHL_like_2 Location: 504468-5051 91 bp Feature: domain Description: NHL Location: 505215-505296 bp Feature: domain Description: NHL Location: 50521 5-505296 bp Feature: gene Location: 512253-512567 bp Feature: gene Location: 512638-513534 bp Ori: AKB27154.1 Feature: domain Description: COG5421 Location: 512641-513409 bp Feature: domain Description: COG5421 Location: 51 2641 -51 3409 bp Feature: gene Location: 514223-515785 bp Ori: AKB27155.1 Feature: domain Description: RVT_N Location: 514397-514640 bp Feature: domain Description: RVT_N Location: 51 4397-51 4640 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 514703-515321 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 4703-51 5321 bp Feature: domain Description: GIIM Note: maturase Location: 515372-515606 bp Feature: domain Description: GIIM Note: maturase Location: 51 5372-51 5606 bp Feature: gene Location: 516527-516730 bp Feature: gene Location: 516755-517504 bp Ori: AKB27157.1 Feature: domain Description: COG4185 Location: 516761-516863 bp Feature: domain Description: COG41 85 Location: 51 6761 -51 6863 bp Feature: domain Description: COG4185 Location: 516989-517451 bp Feature: domain Description: COG41 85 Location: 51 6989-51 7451 bp Feature: gene Location: 2335619-2336602 bp Ori: AKB28590.1 Feature: domain Description: Cmr1_III-B Location: 2335631-2335976 bp Feature: domain Description: Cmr1 _III-B Location: 2335631 -2335976 bp Feature: gene Location: 2336624-2337367 bp Ori: AKB28591.1 Feature: domain Description: Cas6b_N Location: 2336645-2336945 bp Feature: domain Description: Cas6b_N Location: 2336645-2336945 bp Feature: domain Description: Cas6b_C Location: 2336957-2337290 bp Feature: domain Description: Cas6b_C Location: 2336957-2337290 bp Feature: gene Location: 2337490-2338704 bp Ori: AKB28592.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2337781-2338405 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2337781 -2338405 bp Feature: gene Location: 4326133-4327326 bp Ori: AKB30174.1 Feature: domain Description: PepP Location: 4326157-4327306 bp Feature: domain Description: PepP Location: 43261 57-4327306 bp Feature: gene Location: 4328128-4329030 bp Feature: gene Location: 4330446-4331306 bp Ori: AKB30176.1 Feature: domain Description: RVT_N Location: 4330515-4330758 bp Feature: domain Description: RVT_N Location: 433051 5-4330758 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4330803-4331235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4330803-4331 235 bp Feature: gene Location: 4331312-4332787 bp Ori: AKB30177.1 Feature: domain Description: COG3666 Location: 4331324-4331792 bp Feature: domain Description: COG3666 Location: 4331 324-4331 792 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4332332-4332683 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 4332332-4332683 bp Feature: gene Location: 4333072-4333695 bp Ori: AKB30178.1 Feature: domain Description: UPF0228 Location: 4333303-4333687 bp Feature: domain Description: UPF0228 Location: 4333303-4333687 bp Feature: gene Location: 4751605-4752378 bp Ori: AKB30475.1 Feature: domain Description: DnaC Location: 4751608-4752349 bp Feature: domain Description: DnaC Location: 4751 608-4752349 bp Feature: gene Location: 4752375-4752830 bp Feature: gene Location: 4753156-4754364 bp Ori: AKB30477.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4753222-4753879 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4753222-4753879 bp Feature: domain Description: GIIM Note: maturase Location: 4753933-4754164 bp Feature: domain Description: GIIM Note: maturase Location: 4753933-47541 64 bp Feature: gene Location: 4754401-4754655 bp Ori: AKB30478.1 Feature: domain Description: RVT_N Location: 4754470-4754653 bp Feature: domain Description: RVT_N Location: 4754470-4754653 bp Feature: gene Location: 4755451-4757058 bp Ori: AKB30479.1 Feature: domain Description: COG5421 Location: 4755481-4757011 bp Feature: domain Description: COG5421 Location: 4755481 -475701 1 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT SUL1 (COG0659), BDS1 (COG2015), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), YrhK (pfam14145), NHL_like_2 (cd14957), NHL (pfam01436), COG5421 (Transposase ), COG4185 (Predicted ABC-type ATPase )
Cmr1_III-B (cd09657), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR, PepP (COG0006), COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), UPF0228 (pfam05727), DnaC (COG1484)