myRT

myRT report for GCA_000970125.1_ASM97012v1

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Seq: CP009507.1 Methanosarcina siciliae HI350, complete genome (4941115 bp)
Overview 1 RT 1: 2257287-2261310 bp 2 RT 2: 3057811-3063947 bp 3 RT 3: 3499774-3505334 bp 4 RT 4: 4257460-4263018 bp Neighborhood of RT #1 [2257287, 2261609] cas_TM1794_Cmr2 cas_TM1794_Cmr2 SAVED SAVED RVT-CRISPR Neighborhood of RT #2 [3057811, 3063952] DnaC RVT_N RVT-GII GIIM COG4584 COG5421 Neighborhood of RT #3 [3499774, 3505334] RVT_N RVT-GII GIIM YycI Neighborhood of RT #4 [4257460, 4263026] RVT_N RVT-GII COG3666 DDE_Tnp_1_6 UPF0228 Feature: gene Location: 2257287-2258921 bp Ori: AKB32505.1 Feature: domain Description: cas_TM1794_Cmr2 Location: 2257305-2257437 bp Feature: domain Description: cas_TM1 794_Cmr2 Location: 2257305-2257437 bp Feature: domain Description: cas_TM1794_Cmr2 Location: 2257968-2258394 bp Feature: domain Description: cas_TM1 794_Cmr2 Location: 2257968-2258394 bp Feature: gene Location: 2259037-2260098 bp Ori: AKB32506.1 Feature: domain Description: SAVED Location: 2259409-2259634 bp Feature: domain Description: SAVED Location: 2259409-2259634 bp Feature: domain Description: SAVED Location: 2259754-2260075 bp Feature: domain Description: SAVED Location: 2259754-2260075 bp Feature: gene Location: 2260371-2261609 bp Ori: AKB32507.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2260686-2261310 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2260686-2261 31 0 bp Feature: gene Location: 3057811-3058536 bp Ori: AKB33071.1 Feature: domain Description: DnaC Location: 3057814-3058513 bp Feature: domain Description: DnaC Location: 305781 4-305851 3 bp Feature: gene Location: 3058533-3058988 bp Feature: gene Location: 3059314-3060927 bp Ori: AKB33073.1 Feature: domain Description: RVT_N Location: 3059497-3059737 bp Feature: domain Description: RVT_N Location: 3059497-3059737 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3059785-3060442 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3059785-3060442 bp Feature: domain Description: GIIM Note: maturase Location: 3060499-3060727 bp Feature: domain Description: GIIM Note: maturase Location: 3060499-3060727 bp Feature: gene Location: 3061236-3061925 bp Ori: AKB33074.1 Feature: domain Description: COG4584 Location: 3061239-3061806 bp Feature: domain Description: COG4584 Location: 3061 239-3061 806 bp Feature: gene Location: 3062399-3063952 bp Ori: AKB33075.1 Feature: domain Description: COG5421 Location: 3062474-3063947 bp Feature: domain Description: COG5421 Location: 3062474-3063947 bp Feature: gene Location: 3499774-3500838 bp Feature: gene Location: 3500951-3501202 bp Feature: gene Location: 3501688-3503181 bp Ori: AKB33430.1 Feature: domain Description: RVT_N Location: 3501793-3502033 bp Feature: domain Description: RVT_N Location: 3501 793-3502033 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3502081-3502717 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3502081 -350271 7 bp Feature: domain Description: GIIM Note: maturase Location: 3502768-3503002 bp Feature: domain Description: GIIM Note: maturase Location: 3502768-3503002 bp Feature: gene Location: 3503816-3504556 bp Ori: AKB33431.1 Feature: domain Description: YycI Location: 3503897-3504548 bp Feature: domain Description: YycI Location: 3503897-3504548 bp Feature: gene Location: 3504588-3505334 bp Feature: gene Location: 4257460-4258362 bp Feature: gene Location: 4258511-4258924 bp Feature: gene Location: 4259777-4260637 bp Ori: AKB34079.1 Feature: domain Description: RVT_N Location: 4259846-4260089 bp Feature: domain Description: RVT_N Location: 4259846-4260089 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4260134-4260566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 42601 34-4260566 bp Feature: gene Location: 4260643-4262118 bp Ori: AKB34080.1 Feature: domain Description: COG3666 Location: 4260655-4261123 bp Feature: domain Description: COG3666 Location: 4260655-4261 1 23 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4261663-4262014 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 4261 663-426201 4 bp Feature: gene Location: 4262403-4263026 bp Ori: AKB34081.1 Feature: domain Description: UPF0228 Location: 4262634-4263018 bp Feature: domain Description: UPF0228 Location: 4262634-426301 8 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT cas_TM1794_Cmr2 (TIGR02577), SAVED (pfam18145), RVT-CRISPR, DnaC (COG1484), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase ), COG5421 (Transposase ), YycI (pfam09648)
COG3666 (Transposase ), DDE_Tnp_1_6 (pfam13751), UPF0228 (pfam05727)