myRT

myRT report for GCA_000970145.1_ASM97014v1

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Seq: CP009508.1 Methanosarcina siciliae C2J, complete genome (5427890 bp)
Overview 1 RT 1: 1107432-1112975 bp 2 RT 2: 1390146-1394461 bp 3 RT 3: 1528220-1537999 bp 4 RT 4: 1572573-1577962 bp 5 RT 5: 2111323-2116209 bp 6 RT 6: 2387198-2390009 bp 7 RT 7: 2764993-2768022 bp 8 RT 8: 3328811-3336252 bp 9 RT 9: 4715005-4721555 bp 10 RT 10: 5144156-5150564 bp 11 RT 11: 5164812-5168596 bp Neighborhood of RT #1 [1107432, 1113082] HicB COG3547 RVT_N RVT-GII GIIM DDE_3 Neighborhood of RT #2 [1390146, 1394532] COG3666 COG3547 RVT_N RVT-GII GIIM Transposase_mut Neighborhood of RT #3 [1528220, 1537999] PLN02497 S-layer S-layer S-layer S-layer S-layer S-layer S-layer NosD_copper_fam NosD PGF_pre_PGF COG5421 RVT_N RVT-GII GIIM MATE_MJ0709_like Neighborhood of RT #4 [1572573, 1578045] InsG MULE RVT_N RVT-GII GIIM TPR TPR_12 TPR_12 TPR_12 Neighborhood of RT #5 [2111323, 2116370] COG3547 RVT_N RVT-GII RVT-GII GIIM CcmA Neighborhood of RT #6 [2387198, 2390038] GIIM RVT_N RVT-GII COG3547 Neighborhood of RT #7 [2764993, 2768339] Cmr1_III-B Cas6b_N Cas6b_C RVT-CRISPR Neighborhood of RT #8 [3328811, 3336287] GppA COG4584 RVT_N RVT-GII GIIM RVT_N RVT-GII GIIM DnaC InsB Neighborhood of RT #9 [4715005, 4721659] PepP RVT_N RVT-GII COG3666 COG3666 DDE_Tnp_1_6 Neighborhood of RT #10 [5144156, 5150564] DnaC COG4584 RVT-GII GIIM DDE_Tnp_ISAZ013 RVT_N RVT-GII GIIM COG3293 COG3293 Neighborhood of RT #11 [5164812, 5168596] COG5421 COG4584 RVT_N RVT-GII GIIM Feature: gene Location: 1107432-1107650 bp Ori: AKB35500.1 Feature: domain Description: HicB Location: 1107435-1107645 bp Feature: domain Description: HicB Location: 1 1 07435-1 1 07645 bp Feature: gene Location: 1108160-1109272 bp Ori: AKB35501.1 Feature: domain Description: COG3547 Location: 1108187-1109243 bp Feature: domain Description: COG3547 Location: 1 1 081 87-1 1 09243 bp Feature: gene Location: 1109692-1111254 bp Ori: AKB35502.1 Feature: domain Description: RVT_N Location: 1109866-1110109 bp Feature: domain Description: RVT_N Location: 1 1 09866-1 1 1 01 09 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1110172-1110790 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 1 1 01 72-1 1 1 0790 bp Feature: domain Description: GIIM Note: maturase Location: 1110841-1111075 bp Feature: domain Description: GIIM Note: maturase Location: 1 1 1 0841 -1 1 1 1 075 bp Feature: gene Location: 1111401-1111544 bp Feature: gene Location: 1112234-1113082 bp Ori: AKB35504.1 Feature: domain Description: DDE_3 Location: 1112528-1112975 bp Feature: domain Description: DDE_3 Location: 1 1 1 2528-1 1 1 2975 bp Feature: gene Location: 1390146-1390337 bp Ori: AKB35748.1 Feature: domain Description: COG3666 Location: 1390149-1390293 bp Feature: domain Description: COG3666 Location: 1 3901 49-1 390293 bp Feature: gene Location: 1390608-1391720 bp Ori: AKB35749.1 Feature: domain Description: COG3547 Location: 1390635-1391691 bp Feature: domain Description: COG3547 Location: 1 390635-1 391 691 bp Feature: gene Location: 1392140-1393702 bp Ori: AKB35750.1 Feature: domain Description: RVT_N Location: 1392314-1392557 bp Feature: domain Description: RVT_N Location: 1 39231 4-1 392557 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1392620-1393238 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 392620-1 393238 bp Feature: domain Description: GIIM Note: maturase Location: 1393289-1393523 bp Feature: domain Description: GIIM Note: maturase Location: 1 393289-1 393523 bp Feature: gene Location: 1393853-1393996 bp Feature: gene Location: 1394230-1394532 bp Ori: AKB35752.1 Feature: domain Description: Transposase_mut Location: 1394236-1394461 bp Feature: domain Description: Transposase_mut Location: 1 394236-1 394461 bp Feature: gene Location: 1528220-1533310 bp Ori: AKB35869.1 Feature: domain Description: PLN02497 Location: 1528229-1528382 bp Feature: domain Description: PLN02497 Location: 1 528229-1 528382 bp Feature: domain Description: S-layer Location: 1528580-1528754 bp Feature: domain Description: S-layer Location: 1 528580-1 528754 bp Feature: domain Description: S-layer Location: 1528772-1529054 bp Feature: domain Description: S-layer Location: 1 528772-1 529054 bp Feature: domain Description: S-layer Location: 1529063-1529336 bp Feature: domain Description: S-layer Location: 1 529063-1 529336 bp Feature: domain Description: S-layer Location: 1529381-1529636 bp Feature: domain Description: S-layer Location: 1 529381 -1 529636 bp Feature: domain Description: S-layer Location: 1529651-1529957 bp Feature: domain Description: S-layer Location: 1 529651 -1 529957 bp Feature: domain Description: S-layer Location: 1530080-1530812 bp Feature: domain Description: S-layer Location: 1 530080-1 53081 2 bp Feature: domain Description: S-layer Location: 1530905-1531640 bp Feature: domain Description: S-layer Location: 1 530905-1 531 640 bp Feature: domain Description: NosD_copper_fam Location: 1531745-1532072 bp Feature: domain Description: NosD_copper_fam Location: 1 531 745-1 532072 bp Feature: domain Description: NosD Location: 1532126-1532267 bp Feature: domain Description: NosD Location: 1 5321 26-1 532267 bp Feature: domain Description: PGF_pre_PGF Location: 1532663-1533116 bp Feature: domain Description: PGF_pre_PGF Location: 1 532663-1 5331 1 6 bp Feature: gene Location: 1533506-1534033 bp Ori: AKB35870.1 Feature: domain Description: COG5421 Location: 1533557-1534004 bp Feature: domain Description: COG5421 Location: 1 533557-1 534004 bp Feature: gene Location: 1534205-1535683 bp Ori: AKB35871.1 Feature: domain Description: RVT_N Location: 1534295-1534535 bp Feature: domain Description: RVT_N Location: 1 534295-1 534535 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1534583-1535219 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 534583-1 53521 9 bp Feature: domain Description: GIIM Note: maturase Location: 1535270-1535504 bp Feature: domain Description: GIIM Note: maturase Location: 1 535270-1 535504 bp Feature: gene Location: 1536251-1537732 bp Ori: AKB35872.1 Feature: domain Description: MATE_MJ0709_like Location: 1536383-1537694 bp Feature: domain Description: MATE_MJ0709_like Location: 1 536383-1 537694 bp Feature: gene Location: 1537877-1537999 bp Feature: gene Location: 1572573-1573001 bp Ori: AKB35901.1 Feature: domain Description: InsG Location: 1572621-1572924 bp Feature: domain Description: InsG Location: 1 572621 -1 572924 bp Feature: gene Location: 1573095-1574414 bp Ori: AKB35902.1 Feature: domain Description: MULE Location: 1573836-1573941 bp Feature: domain Description: MULE Location: 1 573836-1 573941 bp Feature: gene Location: 1574841-1576319 bp Ori: AKB35903.1 Feature: domain Description: RVT_N Location: 1574931-1575171 bp Feature: domain Description: RVT_N Location: 1 574931 -1 5751 71 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1575219-1575855 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 57521 9-1 575855 bp Feature: domain Description: GIIM Note: maturase Location: 1575906-1576140 bp Feature: domain Description: GIIM Note: maturase Location: 1 575906-1 5761 40 bp Feature: gene Location: 1576702-1577163 bp Ori: AKB35904.1 Feature: domain Description: TPR Location: 1576741-1577080 bp Feature: domain Description: TPR Location: 1 576741 -1 577080 bp Feature: gene Location: 1577230-1578045 bp Ori: AKB35905.1 Feature: domain Description: TPR_12 Location: 1577260-1577461 bp Feature: domain Description: TPR_1 2 Location: 1 577260-1 577461 bp Feature: domain Description: TPR_12 Location: 1577488-1577704 bp Feature: domain Description: TPR_1 2 Location: 1 577488-1 577704 bp Feature: domain Description: TPR_12 Location: 1577761-1577962 bp Feature: domain Description: TPR_1 2 Location: 1 577761 -1 577962 bp Feature: gene Location: 2111323-2112327 bp Ori: AKB36327.1 Feature: domain Description: COG3547 Location: 2111350-2112307 bp Feature: domain Description: COG3547 Location: 21 1 1 350-21 1 2307 bp Feature: gene Location: 2112672-2112830 bp Feature: gene Location: 2113250-2113825 bp Ori: AKB36329.1 Feature: domain Description: RVT_N Location: 2113424-2113667 bp Feature: domain Description: RVT_N Location: 21 1 3424-21 1 3667 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2113730-2113820 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 3730-21 1 3820 bp Feature: gene Location: 2113893-2114813 bp Ori: AKB36330.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2113902-2114349 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 21 1 3902-21 1 4349 bp Feature: domain Description: GIIM Note: maturase Location: 2114400-2114634 bp Feature: domain Description: GIIM Note: maturase Location: 21 1 4400-21 1 4634 bp Feature: gene Location: 2114962-2115105 bp Feature: gene Location: 2115504-2116370 bp Ori: AKB36332.1 Feature: domain Description: CcmA Location: 2115513-2116209 bp Feature: domain Description: CcmA Location: 21 1 551 3-21 1 6209 bp Feature: gene Location: 2387198-2387344 bp Feature: gene Location: 2387493-2388014 bp Ori: AKB36548.1 Feature: domain Description: GIIM Note: maturase Location: 2387601-2387835 bp Feature: domain Description: GIIM Note: maturase Location: 2387601 -2387835 bp Feature: gene Location: 2388023-2388841 bp Ori: AKB36549.1 Feature: domain Description: RVT_N Location: 2388026-2388224 bp Feature: domain Description: RVT_N Location: 2388026-2388224 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2388287-2388812 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2388287-238881 2 bp Feature: gene Location: 2388918-2389058 bp Feature: gene Location: 2389478-2390038 bp Ori: AKB36551.1 Feature: domain Description: COG3547 Location: 2389526-2390009 bp Feature: domain Description: COG3547 Location: 2389526-2390009 bp Feature: gene Location: 2764993-2765970 bp Ori: AKB36822.1 Feature: domain Description: Cmr1_III-B Location: 2765017-2765437 bp Feature: domain Description: Cmr1 _III-B Location: 276501 7-2765437 bp Feature: gene Location: 2766241-2766984 bp Ori: AKB36823.1 Feature: domain Description: Cas6b_N Location: 2766262-2766562 bp Feature: domain Description: Cas6b_N Location: 2766262-2766562 bp Feature: domain Description: Cas6b_C Location: 2766574-2766907 bp Feature: domain Description: Cas6b_C Location: 2766574-2766907 bp Feature: gene Location: 2767107-2768339 bp Ori: AKB36824.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2767398-2768022 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 2767398-2768022 bp Feature: gene Location: 3328811-3329638 bp Ori: AKB37262.1 Feature: domain Description: GppA Location: 3328817-3329591 bp Feature: domain Description: GppA Location: 332881 7-3329591 bp Feature: gene Location: 3329721-3330410 bp Ori: AKB37263.1 Feature: domain Description: COG4584 Location: 3329724-3330291 bp Feature: domain Description: COG4584 Location: 3329724-3330291 bp Feature: gene Location: 3330835-3332079 bp Ori: AKB37264.1 Feature: domain Description: RVT_N Location: 3330904-3331147 bp Feature: domain Description: RVT_N Location: 3330904-3331 1 47 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3331192-3331849 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3331 1 92-3331 849 bp Feature: domain Description: GIIM Note: maturase Location: 3331903-3332074 bp Feature: domain Description: GIIM Note: maturase Location: 3331 903-3332074 bp Feature: gene Location: 3332182-3332334 bp Feature: gene Location: 3332783-3334261 bp Ori: AKB37266.1 Feature: domain Description: RVT_N Location: 3332873-3333113 bp Feature: domain Description: RVT_N Location: 3332873-33331 1 3 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3333161-3333797 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 33331 61 -3333797 bp Feature: domain Description: GIIM Note: maturase Location: 3333848-3334082 bp Feature: domain Description: GIIM Note: maturase Location: 3333848-3334082 bp Feature: gene Location: 3335245-3336018 bp Ori: AKB37267.1 Feature: domain Description: DnaC Location: 3335248-3335989 bp Feature: domain Description: DnaC Location: 3335248-3335989 bp Feature: gene Location: 3336063-3336287 bp Ori: AKB37268.1 Feature: domain Description: InsB Location: 3336066-3336252 bp Feature: domain Description: InsB Location: 3336066-3336252 bp Feature: gene Location: 4715005-4716198 bp Ori: AKB38444.1 Feature: domain Description: PepP Location: 4715029-4716178 bp Feature: domain Description: PepP Location: 471 5029-471 61 78 bp Feature: gene Location: 4717000-4717902 bp Feature: gene Location: 4719319-4720179 bp Ori: AKB38446.1 Feature: domain Description: RVT_N Location: 4719388-4719631 bp Feature: domain Description: RVT_N Location: 471 9388-471 9631 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4719676-4720105 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 471 9676-47201 05 bp Feature: gene Location: 4720185-4720400 bp Ori: AKB38447.1 Feature: domain Description: COG3666 Location: 4720197-4720398 bp Feature: domain Description: COG3666 Location: 47201 97-4720398 bp Feature: gene Location: 4720430-4721659 bp Ori: AKB38448.1 Feature: domain Description: COG3666 Location: 4720436-4720664 bp Feature: domain Description: COG3666 Location: 4720436-4720664 bp Feature: domain Description: DDE_Tnp_1_6 Location: 4721204-4721555 bp Feature: domain Description: DDE_Tnp_1 _6 Location: 4721 204-4721 555 bp Feature: gene Location: 5144156-5144383 bp Ori: AKB38754.1 Feature: domain Description: DnaC Location: 5144159-5144369 bp Feature: domain Description: DnaC Location: 51 441 59-51 44369 bp Feature: gene Location: 5144380-5145129 bp Ori: AKB38755.1 Feature: domain Description: COG4584 Location: 5144449-5144731 bp Feature: domain Description: COG4584 Location: 51 44449-51 44731 bp Feature: gene Location: 5145161-5145880 bp Ori: AKB38756.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5145185-5145395 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 451 85-51 45395 bp Feature: domain Description: GIIM Note: maturase Location: 5145449-5145680 bp Feature: domain Description: GIIM Note: maturase Location: 51 45449-51 45680 bp Feature: gene Location: 5145946-5147184 bp Ori: AKB38757.1 Feature: domain Description: DDE_Tnp_ISAZ013 Location: 5146243-5147164 bp Feature: domain Description: DDE_Tnp_ISAZ01 3 Location: 51 46243-51 471 64 bp Feature: gene Location: 5147519-5148850 bp Ori: AKB38758.1 Feature: domain Description: RVT_N Location: 5147522-5147741 bp Feature: domain Description: RVT_N Location: 51 47522-51 47741 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5147786-5148446 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 47786-51 48446 bp Feature: domain Description: GIIM Note: maturase Location: 5148503-5148731 bp Feature: domain Description: GIIM Note: maturase Location: 51 48503-51 48731 bp Feature: gene Location: 5148939-5149562 bp Ori: AKB38759.1 Feature: domain Description: COG3293 Location: 5148942-5149158 bp Feature: domain Description: COG3293 Location: 51 48942-51 491 58 bp Feature: domain Description: COG3293 Location: 5149167-5149545 bp Feature: domain Description: COG3293 Location: 51 491 67-51 49545 bp Feature: gene Location: 5150337-5150564 bp Feature: gene Location: 5164812-5165021 bp Ori: AKB38773.1 Feature: domain Description: COG5421 Location: 5164815-5164977 bp Feature: domain Description: COG5421 Location: 51 6481 5-51 64977 bp Feature: gene Location: 5165225-5165890 bp Ori: AKB38774.1 Feature: domain Description: COG4584 Location: 5165231-5165771 bp Feature: domain Description: COG4584 Location: 51 65231 -51 65771 bp Feature: gene Location: 5166187-5167560 bp Ori: AKB38775.1 Feature: domain Description: RVT_N Location: 5166385-5166628 bp Feature: domain Description: RVT_N Location: 51 66385-51 66628 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5166673-5167330 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 51 66673-51 67330 bp Feature: domain Description: GIIM Note: maturase Location: 5167384-5167555 bp Feature: domain Description: GIIM Note: maturase Location: 51 67384-51 67555 bp Feature: gene Location: 5167663-5167815 bp Feature: gene Location: 5168150-5168596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT HicB (pfam05534), COG3547 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DDE_3 (pfam13358), COG3666 (Transposase ), Transposase_mut (pfam00872), PLN02497 (probable pectinesterase), S-layer (pfam07752)
NosD_copper_fam (TIGR04247), NosD (pfam05048), PGF_pre_PGF (TIGR04213), COG5421 (Transposase ), MATE_MJ0709_like (cd13147), InsG (COG3385), MULE (pfam10551), TPR (smart00028), TPR_12 (pfam13424), CcmA (COG4133)
Cmr1_III-B (cd09657), Cas6b_N (pfam17955), Cas6b_C, RVT-CRISPR, GppA (COG0248), COG4584 (Transposase ), DnaC (COG1484), InsB (COG1662), PepP (COG0006), DDE_Tnp_1_6 (pfam13751)
DDE_Tnp_ISAZ013 (pfam07592), COG3293 (Transposase )