myRT

myRT report for GCA_000970165.1_ASM97016v1

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Seq: CP009509.1 Methanosarcina mazei WWM610, complete genome (4096482 bp)
Overview 1 RT 1: 1616658-1618499 bp 2 RT 2: 2444522-2451548 bp 3 RT 3: 2629016-2637596 bp Neighborhood of RT #1 [1616658, 1618510] RVT-CRISPR GIIM Cas6b_N Cas6b_C Y1_Tnp Neighborhood of RT #2 [2444522, 2451601] SEFIR DnaC RVT_N RVT-GII GIIM COG4584 DUF2683 Neighborhood of RT #3 [2629016, 2637596] YjbI DUF2254 RVT_N RVT-GII GIIM Feature: gene Location: 1616658-1617104 bp Ori: AKB40288.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1616661-1616778 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 61 6661 -1 61 6778 bp Feature: domain Description: GIIM Note: maturase Location: 1616940-1617099 bp Feature: domain Description: GIIM Note: maturase Location: 1 61 6940-1 61 7099 bp Feature: gene Location: 1617227-1617901 bp Ori: AKB40289.1 Feature: domain Description: Cas6b_N Location: 1617248-1617548 bp Feature: domain Description: Cas6b_N Location: 1 61 7248-1 61 7548 bp Feature: domain Description: Cas6b_C Location: 1617560-1617893 bp Feature: domain Description: Cas6b_C Location: 1 61 7560-1 61 7893 bp Feature: gene Location: 1618100-1618510 bp Ori: AKB40290.1 Feature: domain Description: Y1_Tnp Location: 1618142-1618499 bp Feature: domain Description: Y1 _Tnp Location: 1 61 81 42-1 61 8499 bp Feature: gene Location: 2444522-2445547 bp Ori: AKB40922.1 Feature: domain Description: SEFIR Location: 2444582-2445002 bp Feature: domain Description: SEFIR Location: 2444582-2445002 bp Feature: gene Location: 2446737-2447534 bp Ori: AKB40923.1 Feature: domain Description: DnaC Location: 2446740-2447484 bp Feature: domain Description: DnaC Location: 2446740-2447484 bp Feature: gene Location: 2448312-2449925 bp Ori: AKB40924.1 Feature: domain Description: RVT_N Location: 2448495-2448738 bp Feature: domain Description: RVT_N Location: 2448495-2448738 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2448783-2449440 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2448783-2449440 bp Feature: domain Description: GIIM Note: maturase Location: 2449494-2449725 bp Feature: domain Description: GIIM Note: maturase Location: 2449494-2449725 bp Feature: gene Location: 2450234-2450923 bp Ori: AKB40925.1 Feature: domain Description: COG4584 Location: 2450237-2450804 bp Feature: domain Description: COG4584 Location: 2450237-2450804 bp Feature: gene Location: 2451329-2451601 bp Ori: AKB40926.1 Feature: domain Description: DUF2683 Location: 2451335-2451548 bp Feature: domain Description: DUF2683 Location: 2451 335-2451 548 bp Feature: gene Location: 2629016-2630011 bp Ori: AKB41072.1 Feature: domain Description: YjbI Location: 2629637-2629895 bp Feature: domain Description: YjbI Location: 2629637-2629895 bp Feature: gene Location: 2630908-2633724 bp Ori: AKB41073.1 Feature: domain Description: DUF2254 Location: 2630974-2631433 bp Feature: domain Description: DUF2254 Location: 2630974-2631 433 bp Feature: gene Location: 2634153-2635631 bp Ori: AKB41074.1 Feature: domain Description: RVT_N Location: 2634243-2634486 bp Feature: domain Description: RVT_N Location: 2634243-2634486 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2634540-2635167 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2634540-26351 67 bp Feature: domain Description: GIIM Note: maturase Location: 2635218-2635452 bp Feature: domain Description: GIIM Note: maturase Location: 263521 8-2635452 bp Feature: gene Location: 2636517-2636813 bp Feature: gene Location: 2637351-2637596 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-CRISPR, GIIM (pfam08388), Cas6b_N (pfam17955), Cas6b_C, Y1_Tnp (pfam01797), SEFIR (pfam08357), DnaC (COG1484), RVT_N (pfam13655), RVT-GII, COG4584 (Transposase )
DUF2683 (pfam10884), YjbI (COG2346), DUF2254 (pfam10011)