myRT

myRT report for GCA_000970225.1_ASM97022v1

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Seq: CP009513.1 Methanosarcina mazei LYC, complete genome (4154344 bp)
Overview 1 RT 1: 1612733-1618624 bp 2 RT 2: 2563759-2568544 bp 3 RT 3: 2944103-2952962 bp Neighborhood of RT #1 [1612733, 1619121] COG3293 COG3293 RVT-CRISPR Csx1_III-U Cas10_III cas_TM1794_Cmr2 Neighborhood of RT #2 [2563759, 2568597] DnaC DnaC RVT_N RVT-GII GIIM COG4584 DUF2683 Neighborhood of RT #3 [2944103, 2952967] lysS Lhr RVT-Retrons COG1669 YkvA Feature: gene Location: 1612733-1613554 bp Ori: AKB67852.1 Feature: domain Description: COG3293 Location: 1612757-1613096 bp Feature: domain Description: COG3293 Location: 1 61 2757-1 61 3096 bp Feature: domain Description: COG3293 Location: 1613132-1613525 bp Feature: domain Description: COG3293 Location: 1 61 31 32-1 61 3525 bp Feature: gene Location: 1615209-1616333 bp Ori: AKB67853.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1615389-1616013 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 1 61 5389-1 61 601 3 bp Feature: gene Location: 1616551-1617372 bp Ori: AKB67854.1 Feature: domain Description: Csx1_III-U Location: 1617118-1617322 bp Feature: domain Description: Csx1 _III-U Location: 1 61 71 1 8-1 61 7322 bp Feature: gene Location: 1617490-1619121 bp Ori: AKB67855.1 Feature: domain Description: Cas10_III Location: 1617727-1617946 bp Feature: domain Description: Cas1 0_III Location: 1 61 7727-1 61 7946 bp Feature: domain Description: cas_TM1794_Cmr2 Location: 1618159-1618624 bp Feature: domain Description: cas_TM1 794_Cmr2 Location: 1 61 81 59-1 61 8624 bp Feature: gene Location: 2563759-2564346 bp Ori: AKB68592.1 Feature: domain Description: DnaC Location: 2563762-2564320 bp Feature: domain Description: DnaC Location: 2563762-2564320 bp Feature: gene Location: 2564343-2564531 bp Ori: AKB68593.1 Feature: domain Description: DnaC Location: 2564346-2564508 bp Feature: domain Description: DnaC Location: 2564346-2564508 bp Feature: gene Location: 2565309-2566808 bp Ori: AKB68594.1 Feature: domain Description: RVT_N Location: 2565378-2565621 bp Feature: domain Description: RVT_N Location: 2565378-2565621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2565666-2566323 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2565666-2566323 bp Feature: domain Description: GIIM Note: maturase Location: 2566377-2566608 bp Feature: domain Description: GIIM Note: maturase Location: 2566377-2566608 bp Feature: gene Location: 2567230-2567919 bp Ori: AKB68595.1 Feature: domain Description: COG4584 Location: 2567233-2567800 bp Feature: domain Description: COG4584 Location: 2567233-2567800 bp Feature: gene Location: 2568325-2568597 bp Ori: AKB68596.1 Feature: domain Description: DUF2683 Location: 2568331-2568544 bp Feature: domain Description: DUF2683 Location: 2568331 -2568544 bp Feature: gene Location: 2944103-2945632 bp Ori: AKB68905.1 Feature: domain Description: lysS Location: 2944190-2945627 bp Feature: domain Description: lysS Location: 29441 90-2945627 bp Feature: gene Location: 2945952-2948846 bp Ori: AKB68906.1 Feature: domain Description: Lhr Location: 2945967-2948478 bp Feature: domain Description: Lhr Location: 2945967-2948478 bp Feature: gene Location: 2949425-2950621 bp Ori: AKB68907.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2949620-2950160 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2949620-29501 60 bp Feature: gene Location: 2951661-2951957 bp Ori: AKB68908.1 Feature: domain Description: COG1669 Location: 2951664-2951946 bp Feature: domain Description: COG1 669 Location: 2951 664-2951 946 bp Feature: gene Location: 2952575-2952967 bp Ori: AKB68909.1 Feature: domain Description: YkvA Location: 2952674-2952962 bp Feature: domain Description: YkvA Location: 2952674-2952962 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT COG3293 (Transposase ), RVT-CRISPR, Csx1_III-U (cl21570), Cas10_III (cl21742), cas_TM1794_Cmr2 (TIGR02577), DnaC (COG1484), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), COG4584 (Transposase )
DUF2683 (pfam10884), lysS (PRK02983), Lhr (COG1201), RVT-Retrons, COG1669 (Predicted nucleotidyltransferase ), YkvA (COG3339)