myRT

myRT report for GCA_000970245.1_ASM97024v1

Download annotations/find similar RTs

Seq: CP009514.1 Methanosarcina mazei C16, complete genome (4166241 bp)
Overview 1 RT 1: 1074893-1081009 bp 2 RT 2: 1336308-1341121 bp 3 RT 3: 2024037-2031798 bp 4 RT 4: 3300128-3302876 bp Neighborhood of RT #1 [1074893, 1081032] YjbI YjbI COG4584 RVT_N RVT-GII GIIM COG4584 DnaC Neighborhood of RT #2 [1336308, 1341171] DUF2683 COG4584 RVT_N RVT-GII GIIM DnaC Neighborhood of RT #3 [2024037, 2031809] lysS Lhr RVT-Retrons HicB COG1669 Neighborhood of RT #4 [3300128, 3302929] RVT-CRISPR Cas6b_N Cas6b_C Cmr1 Cmr1 Feature: gene Location: 1074893-1075771 bp Ori: AKB70778.1 Feature: domain Description: YjbI Location: 1074899-1075220 bp Feature: domain Description: YjbI Location: 1 074899-1 075220 bp Feature: domain Description: YjbI Location: 1075334-1075649 bp Feature: domain Description: YjbI Location: 1 075334-1 075649 bp Feature: gene Location: 1076868-1077557 bp Ori: AKB70779.1 Feature: domain Description: COG4584 Location: 1076871-1077438 bp Feature: domain Description: COG4584 Location: 1 076871 -1 077438 bp Feature: gene Location: 1077985-1079484 bp Ori: AKB70780.1 Feature: domain Description: RVT_N Location: 1078054-1078297 bp Feature: domain Description: RVT_N Location: 1 078054-1 078297 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1078342-1078999 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 078342-1 078999 bp Feature: domain Description: GIIM Note: maturase Location: 1079053-1079284 bp Feature: domain Description: GIIM Note: maturase Location: 1 079053-1 079284 bp Feature: gene Location: 1079516-1080265 bp Ori: AKB70781.1 Feature: domain Description: COG4584 Location: 1079585-1079867 bp Feature: domain Description: COG4584 Location: 1 079585-1 079867 bp Feature: gene Location: 1080262-1081032 bp Ori: AKB70782.1 Feature: domain Description: DnaC Location: 1080265-1081009 bp Feature: domain Description: DnaC Location: 1 080265-1 081 009 bp Feature: gene Location: 1336308-1336580 bp Ori: AKB70994.1 Feature: domain Description: DUF2683 Location: 1336314-1336527 bp Feature: domain Description: DUF2683 Location: 1 33631 4-1 336527 bp Feature: gene Location: 1336986-1337675 bp Ori: AKB70995.1 Feature: domain Description: COG4584 Location: 1336989-1337556 bp Feature: domain Description: COG4584 Location: 1 336989-1 337556 bp Feature: gene Location: 1338097-1339596 bp Ori: AKB70996.1 Feature: domain Description: RVT_N Location: 1338166-1338409 bp Feature: domain Description: RVT_N Location: 1 3381 66-1 338409 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1338454-1339111 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 338454-1 3391 1 1 bp Feature: domain Description: GIIM Note: maturase Location: 1339165-1339396 bp Feature: domain Description: GIIM Note: maturase Location: 1 3391 65-1 339396 bp Feature: gene Location: 1340138-1340377 bp Feature: gene Location: 1340374-1341171 bp Ori: AKB70998.1 Feature: domain Description: DnaC Location: 1340377-1341121 bp Feature: domain Description: DnaC Location: 1 340377-1 341 1 21 bp Feature: gene Location: 2024037-2025572 bp Ori: AKB71549.1 Feature: domain Description: lysS Location: 2024130-2025567 bp Feature: domain Description: lysS Location: 20241 30-2025567 bp Feature: gene Location: 2025926-2028820 bp Ori: AKB71550.1 Feature: domain Description: Lhr Location: 2025941-2028452 bp Feature: domain Description: Lhr Location: 2025941 -2028452 bp Feature: gene Location: 2028836-2030518 bp Ori: AKB71551.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2029076-2029616 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2029076-202961 6 bp Feature: gene Location: 2030875-2031162 bp Ori: AKB71552.1 Feature: domain Description: HicB Location: 2031052-2031157 bp Feature: domain Description: HicB Location: 2031 052-2031 1 57 bp Feature: gene Location: 2031513-2031809 bp Ori: AKB71553.1 Feature: domain Description: COG1669 Location: 2031516-2031798 bp Feature: domain Description: COG1 669 Location: 2031 51 6-2031 798 bp Feature: gene Location: 3300128-3301252 bp Ori: AKB72564.1 Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3300308-3300932 bp Feature: RT Description: RVT-CRISPR Note: CRISPR RT Location: 3300308-3300932 bp Feature: gene Location: 3301326-3302048 bp Ori: AKB72565.1 Feature: domain Description: Cas6b_N Location: 3301395-3301695 bp Feature: domain Description: Cas6b_N Location: 3301 395-3301 695 bp Feature: domain Description: Cas6b_C Location: 3301707-3302040 bp Feature: domain Description: Cas6b_C Location: 3301 707-3302040 bp Feature: gene Location: 3302096-3302929 bp Ori: AKB72566.1 Feature: domain Description: Cmr1 Location: 3302105-3302339 bp Feature: domain Description: Cmr1 Location: 33021 05-3302339 bp Feature: domain Description: Cmr1 Location: 3302774-3302876 bp Feature: domain Description: Cmr1 Location: 3302774-3302876 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT YjbI (COG2346), COG4584 (Transposase ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), DnaC (COG1484), DUF2683 (pfam10884), lysS (PRK02983), Lhr (COG1201), RVT-Retrons
HicB (pfam05534), COG1669 (Predicted nucleotidyltransferase ), RVT-CRISPR, Cas6b_N (pfam17955), Cas6b_C, Cmr1 (COG1367)