myRT

myRT report for GCA_000981825.1_ASM98182v1

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Seq: CP011317.1 Pseudomonas aeruginosa strain Carb01 63, complete genome (7497593 bp)
Overview 1 RT 1: 705745-719819 bp 2 RT 2: 736077-744897 bp 3 RT 3: 1326454-1334436 bp 4 RT 4: 2948963-2956274 bp 5 RT 5: 5493638-5499322 bp Neighborhood of RT #1 [705745, 719821] IMPa_N_2 IMPa_helical Peptidase_M60 COG3177 RVT_N RVT-GII GIIM HNH PBP2_BvgS_HisK_like PRK09776 PAS PRK10060 PRK05658 Neighborhood of RT #2 [736077, 744926] PRK10770 LptD RVT_N RVT-GII YkfC HNH COG3178 NTP_transferase_like_1 Neighborhood of RT #3 [1326454, 1334453] ABC_phnC DUF772 RVT-GII GIIM CHD CHD COG4271 Neighborhood of RT #4 [2948963, 2957329] AAA_21 AAA_21 RVT-UG5 YeeA DUF262 Neighborhood of RT #5 [5493638, 5499327] SdhE RVT_N RVT-GII YkfC HNH YgfZ HDOD Feature: gene Location: 705745-708471 bp Ori: AKE67257.1 Feature: domain Description: IMPa_N_2 Location: 705952-706534 bp Feature: domain Description: IMPa_N_2 Location: 705952-706534 bp Feature: domain Description: IMPa_helical Location: 706615-706942 bp Feature: domain Description: IMPa_helical Location: 70661 5-706942 bp Feature: domain Description: Peptidase_M60 Location: 707386-708316 bp Feature: domain Description: Peptidase_M60 Location: 707386-70831 6 bp Feature: gene Location: 709514-710635 bp Ori: AKE67258.1 Feature: domain Description: COG3177 Location: 709532-710624 bp Feature: domain Description: COG31 77 Location: 709532-71 0624 bp Feature: gene Location: 711358-713043 bp Ori: AKE67259.1 Feature: domain Description: RVT_N Location: 711415-711655 bp Feature: domain Description: RVT_N Location: 71 1 41 5-71 1 655 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 711703-712339 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 71 1 703-71 2339 bp Feature: domain Description: GIIM Note: maturase Location: 712393-712624 bp Feature: domain Description: GIIM Note: maturase Location: 71 2393-71 2624 bp Feature: domain Description: HNH Note: nucleases Location: 712876-713014 bp Feature: domain Description: HNH Note: nucleases Location: 71 2876-71 301 4 bp Feature: gene Location: 714124-717861 bp Ori: AKE67260.1 Feature: domain Description: PBP2_BvgS_HisK_like Location: 714232-714889 bp Feature: domain Description: PBP2_BvgS_HisK_like Location: 71 4232-71 4889 bp Feature: domain Description: PRK09776 Location: 715102-715573 bp Feature: domain Description: PRK09776 Location: 71 51 02-71 5573 bp Feature: domain Description: PAS Location: 715630-716155 bp Feature: domain Description: PAS Location: 71 5630-71 61 55 bp Feature: domain Description: PRK10060 Location: 716167-717811 bp Feature: domain Description: PRK1 0060 Location: 71 61 67-71 781 1 bp Feature: gene Location: 717968-719821 bp Ori: AKE67261.1 Feature: domain Description: PRK05658 Location: 717980-719819 bp Feature: domain Description: PRK05658 Location: 71 7980-71 981 9 bp Feature: gene Location: 736077-737369 bp Ori: AKE67279.1 Feature: domain Description: PRK10770 Location: 736167-737361 bp Feature: domain Description: PRK1 0770 Location: 7361 67-737361 bp Feature: gene Location: 737350-740121 bp Ori: AKE67280.1 Feature: domain Description: LptD Location: 737545-740107 bp Feature: domain Description: LptD Location: 737545-7401 07 bp Feature: gene Location: 740254-741966 bp Ori: AKE67281.1 Feature: domain Description: RVT_N Location: 740311-740554 bp Feature: domain Description: RVT_N Location: 74031 1 -740554 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740599-741235 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 740599-741 235 bp Feature: domain Description: YkfC Location: 741445-741595 bp Feature: domain Description: YkfC Location: 741 445-741 595 bp Feature: domain Description: HNH Note: nucleases Location: 741772-741910 bp Feature: domain Description: HNH Note: nucleases Location: 741 772-741 91 0 bp Feature: gene Location: 743239-744255 bp Ori: AKE67282.1 Feature: domain Description: COG3178 Location: 743242-744241 bp Feature: domain Description: COG31 78 Location: 743242-744241 bp Feature: gene Location: 744252-744926 bp Ori: AKE67283.1 Feature: domain Description: NTP_transferase_like_1 Location: 744258-744897 bp Feature: domain Description: NTP_transferase_like_1 Location: 744258-744897 bp Feature: gene Location: 1326454-1327281 bp Ori: AKE67857.1 Feature: domain Description: ABC_phnC Location: 1326484-1327198 bp Feature: domain Description: ABC_phnC Location: 1 326484-1 3271 98 bp Feature: gene Location: 1327624-1328265 bp Ori: AKE67858.1 Feature: domain Description: DUF772 Location: 1327774-1327969 bp Feature: domain Description: DUF772 Location: 1 327774-1 327969 bp Feature: gene Location: 1328654-1329922 bp Ori: AKE67859.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1328867-1329524 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 328867-1 329524 bp Feature: domain Description: GIIM Note: maturase Location: 1329602-1329824 bp Feature: domain Description: GIIM Note: maturase Location: 1 329602-1 329824 bp Feature: gene Location: 1331917-1333461 bp Ori: AKE67860.1 Feature: domain Description: CHD Location: 1332133-1332547 bp Feature: domain Description: CHD Location: 1 3321 33-1 332547 bp Feature: domain Description: CHD Location: 1332775-1333264 bp Feature: domain Description: CHD Location: 1 332775-1 333264 bp Feature: gene Location: 1333542-1334453 bp Ori: AKE73337.1 Feature: domain Description: COG4271 Location: 1333767-1334436 bp Feature: domain Description: COG4271 Location: 1 333767-1 334436 bp Feature: gene Location: 2948963-2950102 bp Ori: AKE69351.1 Feature: domain Description: AAA_21 Location: 2949035-2949104 bp Feature: domain Description: AAA_21 Location: 2949035-29491 04 bp Feature: domain Description: AAA_21 Location: 2949578-2949908 bp Feature: domain Description: AAA_21 Location: 2949578-2949908 bp Feature: gene Location: 2950102-2950659 bp Feature: gene Location: 2950656-2953676 bp Ori: AKE69353.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2951151-2951622 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 2951 1 51 -2951 622 bp Feature: gene Location: 2954483-2955454 bp Ori: AKE73393.1 Feature: domain Description: YeeA Location: 2954540-2955320 bp Feature: domain Description: YeeA Location: 2954540-2955320 bp Feature: gene Location: 2955458-2957329 bp Ori: AKE69354.1 Feature: domain Description: DUF262 Location: 2955506-2956274 bp Feature: domain Description: DUF262 Location: 2955506-2956274 bp Feature: gene Location: 5493638-5494090 bp Feature: gene Location: 5494074-5494328 bp Ori: AKE71556.1 Feature: domain Description: SdhE Location: 5494080-5494320 bp Feature: domain Description: SdhE Location: 5494080-5494320 bp Feature: gene Location: 5494404-5496125 bp Ori: AKE71557.1 Feature: domain Description: RVT_N Location: 5494461-5494698 bp Feature: domain Description: RVT_N Location: 5494461 -5494698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5494749-5495385 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5494749-5495385 bp Feature: domain Description: YkfC Location: 5495583-5495739 bp Feature: domain Description: YkfC Location: 5495583-5495739 bp Feature: domain Description: HNH Note: nucleases Location: 5495922-5496060 bp Feature: domain Description: HNH Note: nucleases Location: 5495922-5496060 bp Feature: gene Location: 5497446-5498390 bp Ori: AKE71558.1 Feature: domain Description: YgfZ Location: 5497455-5498355 bp Feature: domain Description: YgfZ Location: 5497455-5498355 bp Feature: gene Location: 5498491-5499327 bp Ori: AKE71559.1 Feature: domain Description: HDOD Location: 5498494-5499322 bp Feature: domain Description: HDOD Location: 5498494-5499322 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT IMPa_N_2 (pfam18650), IMPa_helical (pfam18642), Peptidase_M60 (pfam13402), COG3177 (Fic family protein ), RVT_N (pfam13655), RVT-GII, GIIM (pfam08388), HNH (pfam01844), PBP2_BvgS_HisK_like (cd01007), PRK09776 (putative diguanylate cyclase; Provisional)
PAS (smart00091), PRK10060 (cyclic di-GMP phosphodiesterase), PRK05658 (RNA polymerase sigma factor RpoD; Validated), PRK10770 (peptidyl-prolyl cis-trans isomerase SurA; Provisional), LptD (COG1452), YkfC (COG3344), COG3178 (Predicted phosphotransferase, aminoglycoside/choline kinase (APH/ChoK) family ), NTP_transferase_like_1 (cd06422), ABC_phnC (TIGR02315), DUF772 (pfam05598)
CHD (cd07302), COG4271 (Predicted nucleotide-binding protein containing TIR -like domain ), AAA_21 (pfam13304), RVT-UG5, YeeA (COG1002), DUF262 (pfam03235), SdhE (COG2938), YgfZ (COG0354), HDOD (pfam08668)