myRT

myRT report for GCA_001006005.1_ASM100600v1

Download annotations/find similar RTs

Seq: CP011254.1 Serratia fonticola strain DSM 4576, complete genome (6000511 bp)
Overview 1 RT 1: 567593-573559 bp 2 RT 2: 840384-845435 bp 3 RT 3: 2452018-2454978 bp 4 RT 4: 2552199-2557478 bp 5 RT 5: 4621787-4626550 bp 6 RT 6: 5007940-5014581 bp Neighborhood of RT #1 [567593, 573567] PRK10333 PRK11790 RVT-GII GIIM PRK00702 PRK03635 Neighborhood of RT #2 [840384, 845437] BcsQ RVT-UG4 FimA PRK15287 Neighborhood of RT #3 [2452018, 2454983] RVT-UG4 FimA PRK15287 Neighborhood of RT #4 [2552199, 2557478] RtcB RlaP RVT-GII GIIM COG3440 Neighborhood of RT #5 [4621787, 4627053] YafY EhpR_like RVT-GII GIIM rep_term_tus YdjM Neighborhood of RT #6 [5007940, 5014583] TetR_N TetR_C_28 PRK14995 RVT-GII GIIM Dps cls Feature: gene Location: 567593-568201 bp Ori: AKG68080.1 Feature: domain Description: PRK10333 Location: 567647-568187 bp Feature: domain Description: PRK1 0333 Location: 567647-5681 87 bp Feature: gene Location: 568276-569514 bp Ori: AKG68081.1 Feature: domain Description: PRK11790 Location: 568279-569509 bp Feature: domain Description: PRK1 1 790 Location: 568279-569509 bp Feature: gene Location: 569958-571310 bp Ori: AKG68082.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570279-570897 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 570279-570897 bp Feature: domain Description: GIIM Note: maturase Location: 570945-571176 bp Feature: domain Description: GIIM Note: maturase Location: 570945-571 1 76 bp Feature: gene Location: 571799-572458 bp Ori: AKG68083.1 Feature: domain Description: PRK00702 Location: 571802-572447 bp Feature: domain Description: PRK00702 Location: 571 802-572447 bp Feature: gene Location: 572674-573567 bp Ori: AKG68084.1 Feature: domain Description: PRK03635 Location: 572686-573559 bp Feature: domain Description: PRK03635 Location: 572686-573559 bp Feature: gene Location: 840384-840743 bp Feature: gene Location: 840740-841606 bp Ori: AKG68297.1 Feature: domain Description: BcsQ Location: 840743-841565 bp Feature: domain Description: BcsQ Location: 840743-841 565 bp Feature: gene Location: 843402-844376 bp Ori: AKG72464.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 843747-844194 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 843747-8441 94 bp Feature: gene Location: 844408-844935 bp Ori: AKG72465.1 Feature: domain Description: FimA Location: 844429-844933 bp Feature: domain Description: FimA Location: 844429-844933 bp Feature: gene Location: 844982-845437 bp Ori: AKG72466.1 Feature: domain Description: PRK15287 Location: 844991-845435 bp Feature: domain Description: PRK1 5287 Location: 844991 -845435 bp Feature: gene Location: 2452018-2452851 bp Feature: gene Location: 2452893-2453879 bp Ori: AKG69578.1 Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2453250-2453697 bp Feature: RT Description: RVT-UG4 Note: UG4 RT Location: 2453250-2453697 bp Feature: gene Location: 2453897-2454412 bp Ori: AKG72549.1 Feature: domain Description: FimA Location: 2453912-2454410 bp Feature: domain Description: FimA Location: 245391 2-245441 0 bp Feature: gene Location: 2454483-2454983 bp Ori: AKG69579.1 Feature: domain Description: PRK15287 Location: 2454525-2454978 bp Feature: domain Description: PRK1 5287 Location: 2454525-2454978 bp Feature: gene Location: 2552199-2553434 bp Ori: AKG69656.1 Feature: domain Description: RtcB Location: 2552307-2553432 bp Feature: domain Description: RtcB Location: 2552307-2553432 bp Feature: gene Location: 2553439-2554230 bp Ori: AKG69657.1 Feature: domain Description: RlaP Location: 2553475-2554213 bp Feature: domain Description: RlaP Location: 2553475-255421 3 bp Feature: gene Location: 2554824-2556176 bp Ori: AKG69658.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2555145-2555763 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 25551 45-2555763 bp Feature: domain Description: GIIM Note: maturase Location: 2555811-2556042 bp Feature: domain Description: GIIM Note: maturase Location: 255581 1 -2556042 bp Feature: gene Location: 2556276-2557040 bp Ori: AKG69659.1 Feature: domain Description: COG3440 Location: 2556486-2556972 bp Feature: domain Description: COG3440 Location: 2556486-2556972 bp Feature: gene Location: 2557203-2557478 bp Feature: gene Location: 4621787-4622473 bp Ori: AKG71316.1 Feature: domain Description: YafY Location: 4621790-4622453 bp Feature: domain Description: YafY Location: 4621 790-4622453 bp Feature: gene Location: 4622556-4622927 bp Ori: AKG71317.1 Feature: domain Description: EhpR_like Location: 4622577-4622910 bp Feature: domain Description: EhpR_like Location: 4622577-462291 0 bp Feature: gene Location: 4623397-4624749 bp Ori: AKG71318.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4623718-4624336 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 462371 8-4624336 bp Feature: domain Description: GIIM Note: maturase Location: 4624384-4624615 bp Feature: domain Description: GIIM Note: maturase Location: 4624384-462461 5 bp Feature: gene Location: 4624868-4625803 bp Ori: AKG72657.1 Feature: domain Description: rep_term_tus Location: 4624898-4625792 bp Feature: domain Description: rep_term_tus Location: 4624898-4625792 bp Feature: gene Location: 4625986-4627053 bp Ori: AKG71319.1 Feature: domain Description: YdjM Location: 4625989-4626550 bp Feature: domain Description: YdjM Location: 4625989-4626550 bp Feature: gene Location: 5007940-5008497 bp Ori: AKG71618.1 Feature: domain Description: TetR_N Location: 5007979-5008114 bp Feature: domain Description: TetR_N Location: 5007979-50081 1 4 bp Feature: domain Description: TetR_C_28 Location: 5008192-5008468 bp Feature: domain Description: TetR_C_28 Location: 50081 92-5008468 bp Feature: gene Location: 5008619-5010103 bp Ori: AKG71619.1 Feature: domain Description: PRK14995 Location: 5008634-5010095 bp Feature: domain Description: PRK1 4995 Location: 5008634-501 0095 bp Feature: gene Location: 5010213-5011565 bp Ori: AKG71620.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5010534-5011152 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 501 0534-501 1 1 52 bp Feature: domain Description: GIIM Note: maturase Location: 5011200-5011431 bp Feature: domain Description: GIIM Note: maturase Location: 501 1 200-501 1 431 bp Feature: gene Location: 5012170-5012661 bp Ori: AKG71621.1 Feature: domain Description: Dps Location: 5012197-5012653 bp Feature: domain Description: Dps Location: 501 21 97-501 2653 bp Feature: gene Location: 5013123-5014583 bp Ori: AKG71622.1 Gene: cls Feature: domain Description: cls Location: 5013138-5014581 bp Feature: domain Description: cls Location: 501 31 38-501 4581 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK10333 (5-formyltetrahydrofolate cyclo-ligase family protein; Provisional), PRK11790 (phosphoglycerate dehydrogenase), RVT-GII, GIIM (pfam08388), PRK00702 (ribose-5-phosphate isomerase RpiA), PRK03635 (ArgP/LysG family DNA-binding transcriptional regulator), BcsQ (COG1192), RVT-UG4, FimA (pfam16970), PRK15287 (fimbrial minor subunit StfF)
RtcB (pfam01139), RlaP, COG3440 (Predicted restriction endonuclease ), YafY (COG2378), EhpR_like (cd07261), rep_term_tus (TIGR02648), YdjM (pfam04307), TetR_N (pfam00440), TetR_C_28 (pfam17937), PRK14995 (SmvA family efflux MFS transporter)
Dps (COG0783), cls