myRT

myRT report for GCA_001007915.1_ASM100791v1

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Seq: CP011416.1 Escherichia coli strain CFSAN029787, complete genome (4947515 bp)
Overview 1 RT 1: 2736663-2741001 bp Neighborhood of RT #1 [2736663, 2741264] Resolvase RVT-Retrons HTH_XRE Feature: gene Location: 2736663-2737007 bp Feature: gene Location: 2737290-2737961 bp Ori: AKH24917.1 Feature: domain Description: Resolvase Location: 2737311-2737728 bp Feature: domain Description: Resolvase Location: 273731 1 -2737728 bp Feature: gene Location: 2738222-2739928 bp Ori: AKH24918.1 Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2738372-2738969 bp Feature: RT Description: RVT-Retrons Note: Retrons RT Location: 2738372-2738969 bp Feature: gene Location: 2740063-2740560 bp Feature: gene Location: 2740800-2741264 bp Ori: AKH24919.1 Feature: domain Description: HTH_XRE Location: 2740830-2741001 bp Feature: domain Description: HTH_XRE Location: 2740830-2741 001 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Resolvase (smart00857), RVT-Retrons, HTH_XRE (smart00530)

Seq: CP011417.1 Escherichia coli strain CFSAN029787 plasmid pCFSAN029787_01, complete sequence (293826 bp)
Overview 1 RT 1: 33604-38426 bp 2 RT 2: 60766-66544 bp 3 RT 3: 162714-165442 bp Neighborhood of RT #1 [33604, 38428] TnpB_IS66 LZ_Tnp_IS66 zf-IS66 DDE_Tnp_IS66 DDE_Tnp_IS66_C RVT-GII PRK09409 PRK09413 Neighborhood of RT #2 [60766, 66828] HTH_23 HTH_33 DDE_3 InsE RVT-GII DDE_Tnp_1 DDE_Tnp_1 Neighborhood of RT #3 [162714, 165442] COG3547 DDE_Tnp_IS66_C RVT-GII GIIM DDE_Tnp_IS66 Feature: gene Location: 33604-33951 bp Ori: AKH27176.1 Feature: domain Description: TnpB_IS66 Location: 33631-33922 bp Feature: domain Description: TnpB_IS66 Location: 33631-3392 2 bp Feature: gene Location: 33971-35542 bp Ori: AKH27177.1 Feature: domain Description: LZ_Tnp_IS66 Location: 34109-34334 bp Feature: domain Description: LZ_Tnp_IS66 Location: 34109-34334 bp Feature: domain Description: zf-IS66 Location: 34355-34487 bp Feature: domain Description: zf-IS66 Location: 34355-34487 bp Feature: domain Description: DDE_Tnp_IS66 Location: 34532-35387 bp Feature: domain Description: DDE_Tnp_IS66 Location: 34532 -35387 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 35408-35519 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 35408-35519 bp Feature: gene Location: 35575-36702 bp Ori: AKH27178.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35875-36532 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35875-36532 bp Feature: gene Location: 37200-38105 bp Ori: AKH27179.1 Feature: domain Description: PRK09409 Location: 37203-38103 bp Feature: domain Description: PRK09409 Location: 372 03-38103 bp Feature: gene Location: 38063-38428 bp Ori: AKH27180.1 Feature: domain Description: PRK09413 Location: 38066-38426 bp Feature: domain Description: PRK09413 Location: 38066-3842 6 bp Feature: gene Location: 60766-61797 bp Ori: AKH27209.1 Feature: domain Description: HTH_23 Location: 60844-60985 bp Feature: domain Description: HTH_2 3 Location: 60844-60985 bp Feature: domain Description: HTH_33 Location: 61090-61237 bp Feature: domain Description: HTH_33 Location: 61090-612 37 bp Feature: domain Description: DDE_3 Location: 61294-61714 bp Feature: domain Description: DDE_3 Location: 612 94-61714 bp Feature: gene Location: 62235-62609 bp Ori: AKH27438.1 Feature: domain Description: InsE Location: 62268-62466 bp Feature: domain Description: InsE Location: 62 2 68-62 466 bp Feature: gene Location: 62703-63017 bp Ori: AKH27439.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62706-62991 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 62 706-62 991 bp Feature: gene Location: 64334-65524 bp Ori: AKH27210.1 Feature: domain Description: DDE_Tnp_1 Location: 64643-65240 bp Feature: domain Description: DDE_Tnp_1 Location: 64643-652 40 bp Feature: gene Location: 65638-66828 bp Ori: AKH27211.1 Feature: domain Description: DDE_Tnp_1 Location: 65932-66544 bp Feature: domain Description: DDE_Tnp_1 Location: 65932 -66544 bp Feature: gene Location: 162714-163199 bp Ori: AKH27306.1 Feature: domain Description: COG3547 Location: 162732-163185 bp Feature: domain Description: COG3547 Location: 162 732 -163185 bp Feature: gene Location: 163226-163417 bp Ori: AKH27307.1 Feature: domain Description: DDE_Tnp_IS66_C Location: 163283-163394 bp Feature: domain Description: DDE_Tnp_IS66_C Location: 1632 83-163394 bp Feature: gene Location: 163488-164705 bp Ori: AKH27308.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163674-164328 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 163674-16432 8 bp Feature: domain Description: GIIM Note: maturase Location: 164406-164628 bp Feature: domain Description: GIIM Note: maturase Location: 164406-16462 8 bp Feature: gene Location: 165183-165314 bp Ori: AKH27309.1 Feature: domain Description: DDE_Tnp_IS66 Location: 165195-165288 bp Feature: domain Description: DDE_Tnp_IS66 Location: 165195-1652 88 bp Feature: gene Location: 165314-165442 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT TnpB_IS66 (pfam05717), LZ_Tnp_IS66 (pfam13007), zf-IS66 (pfam13005), DDE_Tnp_IS66 (pfam03050), DDE_Tnp_IS66_C (pfam13817), RVT-GII, PRK09409 (IS2 transposase TnpB; Reviewed), PRK09413 (IS2 repressor TnpA; Reviewed), HTH_23 (pfam13384), HTH_33 (pfam13592)
DDE_3 (pfam13358), InsE (COG2963), DDE_Tnp_1 (pfam01609), COG3547 (Transposase ), GIIM (pfam08388)

Seq: CP011418.1 Escherichia coli strain CFSAN029787 plasmid pCFSAN029787_02, complete sequence (47606 bp)
Overview 1 RT 1: 29156-32362 bp Neighborhood of RT #1 [29156, 32362] PRK09413 PHA02517 RVT-GII GIIM Feature: gene Location: 29156-29521 bp Ori: AKH27515.1 Feature: domain Description: PRK09413 Location: 29159-29519 bp Feature: domain Description: PRK09413 Location: 29159-29519 bp Feature: gene Location: 29611-29997 bp Ori: AKH27492.1 Feature: domain Description: PHA02517 Location: 29614-29995 bp Feature: domain Description: PHA02517 Location: 29614-29995 bp Feature: gene Location: 30174-31682 bp Ori: AKH27516.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 30432-31164 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3 043 2-3 1164 bp Feature: domain Description: GIIM Note: maturase Location: 31242-31437 bp Feature: domain Description: GIIM Note: maturase Location: 3 1242-3 143 7 bp Feature: gene Location: 31651-32076 bp Feature: gene Location: 31991-32362 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK09413 (IS2 repressor TnpA; Reviewed), PHA02517 (putative transposase OrfB; Reviewed), RVT-GII, GIIM (pfam08388)