myRT

myRT report for GCA_001007975.1_ASM100797v1

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Seq: CP011268.1 Candidate division SR1 bacterium Aalborg_AAW-1 chromosome, complete genome (1044756 bp)
Overview 1 RT 1: 36296-43948 bp 2 RT 2: 110329-121321 bp Neighborhood of RT #1 [36296, 43965] RVT-UG14 COG0610 DEXSc_Pif1_like PIF1 KOG0987 HTH_40 Neighborhood of RT #2 [110329, 121341] COG3587 COG3587 Mod Mod RVT-AbiA DEXDc_RapA PRK04914 PRK00052 Feature: gene Location: 36296-37204 bp Feature: gene Location: 37232-37687 bp Feature: gene Location: 37722-39278 bp Ori: AKH32405.1 Feature: RT Description: RVT-UG14 Note: UG14 RT Location: 38121-38613 bp Feature: RT Description: RVT-UG1 4 Note: UG1 4 RT Location: 381 21 -3861 3 bp Feature: gene Location: 39309-42125 bp Ori: AKH32406.1 Gene: hsdR Feature: domain Description: COG0610 Location: 39321-42114 bp Feature: domain Description: COG061 0 Location: 39321 -421 1 4 bp Feature: gene Location: 42244-43965 bp Ori: AKH32407.1 Gene: recD2 Feature: domain Description: DEXSc_Pif1_like Location: 42253-42781 bp Feature: domain Description: DEXSc_Pif1 _like Location: 42253-42781 bp Feature: domain Description: PIF1 Location: 42889-43141 bp Feature: domain Description: PIF1 Location: 42889-431 41 bp Feature: domain Description: KOG0987 Location: 43240-43333 bp Feature: domain Description: KOG0987 Location: 43240-43333 bp Feature: domain Description: HTH_40 Location: 43669-43948 bp Feature: domain Description: HTH_40 Location: 43669-43948 bp Feature: gene Location: 110329-113070 bp Ori: AKH32484.1 Feature: domain Description: COG3587 Location: 110341-112165 bp Feature: domain Description: COG3587 Location: 1 1 0341 -1 1 21 65 bp Feature: domain Description: COG3587 Location: 112171-113050 bp Feature: domain Description: COG3587 Location: 1 1 21 71 -1 1 3050 bp Feature: gene Location: 113108-115099 bp Ori: AKH32485.1 Feature: domain Description: Mod Location: 113348-113876 bp Feature: domain Description: Mod Location: 1 1 3348-1 1 3876 bp Feature: domain Description: Mod Location: 114347-114599 bp Feature: domain Description: Mod Location: 1 1 4347-1 1 4599 bp Feature: gene Location: 115084-117084 bp Ori: AKH32486.1 Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 115537-116017 bp Feature: RT Description: RVT-AbiA Note: AbiA RT Location: 1 1 5537-1 1 601 7 bp Feature: gene Location: 117100-120180 bp Ori: AKH32487.1 Gene: rapA Feature: domain Description: DEXDc_RapA Location: 117208-117958 bp Feature: domain Description: DEXDc_RapA Location: 1 1 7208-1 1 7958 bp Feature: domain Description: PRK04914 Location: 118801-119194 bp Feature: domain Description: PRK0491 4 Location: 1 1 8801 -1 1 91 94 bp Feature: gene Location: 120490-121341 bp Ori: AKH32488.1 Gene: lgt Feature: domain Description: PRK00052 Location: 120496-121321 bp Feature: domain Description: PRK00052 Location: 1 20496-1 21 321 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-UG14, COG0610 (Type I site-specific restriction-modification system, R (restriction) subunit and related helicases ), DEXSc_Pif1_like (cd18037), PIF1 (pfam05970), KOG0987 (KOG0987, DNA helicase PIF1/RRM3 ), HTH_40 (pfam14493), COG3587 (Restriction endonuclease ), Mod (COG2189), RVT-AbiA, DEXDc_RapA (cd18011)
PRK04914 (RNA polymerase-associated protein RapA), PRK00052 (prolipoprotein diacylglyceryl transferase; Reviewed)