myRT

myRT report for GCA_001017775.3_ASM101777v3

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Seq: CP011568.3 Pandoraea thiooxydans strain DSM 25325, complete genome (4464186 bp)
Overview 1 RT 1: 479734-484357 bp 2 RT 2: 905240-916409 bp 3 RT 3: 1847466-1854934 bp 4 RT 4: 2014877-2019588 bp 5 RT 5: 3884383-3888739 bp 6 RT 6: 4309297-4315092 bp Neighborhood of RT #1 [479734, 484386] PRK11151 Dps RVT-GII GIIM NrdG2 NRDD Neighborhood of RT #2 [905240, 916876] DEXDc Z1 IS285 RVT-UG5 COG3587 Mod Neighborhood of RT #3 [1847466, 1855002] GST_N_3 GST_C_6 RVT-GII GIIM Nterm_IS4 DDE_Tnp_1 PRK09579 Neighborhood of RT #4 [2014877, 2019632] RhaT RVT-GII GIIM PRK15092 ManC Neighborhood of RT #5 [3884383, 3888777] DDE_Tnp_ISL3 RVT-GII GIIM gram_neg_porins TauE Neighborhood of RT #6 [4309297, 4315097] hslU PRK05456 RVT-GII GIIM dksA YejR Feature: gene Location: 479734-480678 bp Ori: AKJ70026.1 Feature: domain Description: PRK11151 Location: 479737-480628 bp Feature: domain Description: PRK1 1 1 51 Location: 479737-480628 bp Feature: gene Location: 481026-481514 bp Ori: AKJ70027.1 Feature: domain Description: Dps Location: 481056-481512 bp Feature: domain Description: Dps Location: 481 056-481 51 2 bp Feature: gene Location: 481997-483403 bp Ori: AKJ70717.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482336-482951 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 482336-482951 bp Feature: domain Description: GIIM Note: maturase Location: 483005-483221 bp Feature: domain Description: GIIM Note: maturase Location: 483005-483221 bp Feature: gene Location: 483519-484187 bp Ori: AKJ70028.1 Feature: domain Description: NrdG2 Location: 483537-484080 bp Feature: domain Description: NrdG2 Location: 483537-484080 bp Feature: gene Location: 484192-484386 bp Ori: AKJ70718.1 Feature: domain Description: NRDD Location: 484258-484357 bp Feature: domain Description: NRDD Location: 484258-484357 bp Feature: gene Location: 905240-907438 bp Ori: AKJ66945.1 Feature: domain Description: DEXDc Location: 905309-905855 bp Feature: domain Description: DEXDc Location: 905309-905855 bp Feature: domain Description: Z1 Location: 906119-906776 bp Feature: domain Description: Z1 Location: 9061 1 9-906776 bp Feature: gene Location: 907529-908559 bp Feature: domain Description: IS285 Location: 907583-908477 bp Feature: domain Description: IS285 Location: 907583-908477 bp Feature: gene Location: 908752-911760 bp Ori: AKJ66946.1 Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 909283-909742 bp Feature: RT Description: RVT-UG5 Note: UG5 RT Location: 909283-909742 bp Feature: gene Location: 911923-914985 bp Ori: AKJ66947.1 Feature: domain Description: COG3587 Location: 911926-914977 bp Feature: domain Description: COG3587 Location: 91 1 926-91 4977 bp Feature: gene Location: 914996-916876 bp Ori: AKJ70272.1 Feature: domain Description: Mod Location: 915038-916409 bp Feature: domain Description: Mod Location: 91 5038-91 6409 bp Feature: gene Location: 1847466-1848080 bp Ori: AKJ67645.1 Feature: domain Description: GST_N_3 Location: 1847475-1847694 bp Feature: domain Description: GST_N_3 Location: 1 847475-1 847694 bp Feature: domain Description: GST_C_6 Location: 1847742-1848075 bp Feature: domain Description: GST_C_6 Location: 1 847742-1 848075 bp Feature: gene Location: 1848294-1848533 bp Feature: gene Location: 1849075-1850442 bp Ori: AKJ70370.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1849408-1850023 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 849408-1 850023 bp Feature: domain Description: GIIM Note: maturase Location: 1850080-1850281 bp Feature: domain Description: GIIM Note: maturase Location: 1 850080-1 850281 bp Feature: gene Location: 1850527-1851759 bp Feature: domain Description: Nterm_IS4 Location: 1850572-1850845 bp Feature: domain Description: Nterm_IS4 Location: 1 850572-1 850845 bp Feature: domain Description: DDE_Tnp_1 Location: 1850914-1851580 bp Feature: domain Description: DDE_Tnp_1 Location: 1 85091 4-1 851 580 bp Feature: gene Location: 1851901-1855002 bp Ori: AKJ67647.1 Feature: domain Description: PRK09579 Location: 1851904-1854934 bp Feature: domain Description: PRK09579 Location: 1 851 904-1 854934 bp Feature: gene Location: 2014877-2015749 bp Ori: AKJ70390.2 Feature: domain Description: RhaT Location: 2014883-2015693 bp Feature: domain Description: RhaT Location: 201 4883-201 5693 bp Feature: gene Location: 2015831-2016067 bp Feature: gene Location: 2016775-2018181 bp Ori: AKJ70391.2 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2017114-2017729 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 201 71 1 4-201 7729 bp Feature: domain Description: GIIM Note: maturase Location: 2017783-2017999 bp Feature: domain Description: GIIM Note: maturase Location: 201 7783-201 7999 bp Feature: gene Location: 2018254-2019060 bp Feature: domain Description: PRK15092 Location: 2018266-2019025 bp Feature: domain Description: PRK1 5092 Location: 201 8266-201 9025 bp Feature: gene Location: 2019249-2019632 bp Ori: AKJ67774.1 Feature: domain Description: ManC Location: 2019360-2019588 bp Feature: domain Description: ManC Location: 201 9360-201 9588 bp Feature: gene Location: 3884383-3884724 bp Feature: gene Location: 3884775-3885056 bp Ori: AKJ69170.1 Feature: domain Description: DDE_Tnp_ISL3 Location: 3884778-3884991 bp Feature: domain Description: DDE_Tnp_ISL3 Location: 3884778-3884991 bp Feature: gene Location: 3885133-3886500 bp Ori: AKJ70590.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3885466-3886081 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3885466-3886081 bp Feature: domain Description: GIIM Note: maturase Location: 3886138-3886339 bp Feature: domain Description: GIIM Note: maturase Location: 38861 38-3886339 bp Feature: gene Location: 3886982-3888073 bp Ori: AKJ69171.1 Feature: domain Description: gram_neg_porins Location: 3887054-3888071 bp Feature: domain Description: gram_neg_porins Location: 3887054-3888071 bp Feature: gene Location: 3888073-3888777 bp Ori: AKJ70591.1 Feature: domain Description: TauE Location: 3888082-3888739 bp Feature: domain Description: TauE Location: 3888082-3888739 bp Feature: gene Location: 4309297-4310652 bp Ori: AKJ69529.1 Feature: domain Description: hslU Location: 4309300-4310650 bp Feature: domain Description: hslU Location: 4309300-431 0650 bp Feature: gene Location: 4310674-4311210 bp Ori: AKJ69530.1 Feature: domain Description: PRK05456 Location: 4310692-4311205 bp Feature: domain Description: PRK05456 Location: 431 0692-431 1 205 bp Feature: gene Location: 4311433-4312800 bp Ori: AKJ70648.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4311766-4312381 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 431 1 766-431 2381 bp Feature: domain Description: GIIM Note: maturase Location: 4312438-4312639 bp Feature: domain Description: GIIM Note: maturase Location: 431 2438-431 2639 bp Feature: gene Location: 4313295-4313714 bp Ori: AKJ69531.1 Feature: domain Description: dksA Location: 4313358-4313682 bp Feature: domain Description: dksA Location: 431 3358-431 3682 bp Feature: gene Location: 4314066-4315097 bp Ori: AKJ70649.1 Feature: domain Description: YejR Location: 4314072-4315092 bp Feature: domain Description: YejR Location: 431 4072-431 5092 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT PRK11151 (DNA-binding transcriptional regulator OxyR; Provisional), Dps (COG0783), RVT-GII, GIIM (pfam08388), NrdG2 (TIGR02495), NRDD (pfam13597), DEXDc (smart00487), Z1 (pfam10593), IS285 (COG3328), RVT-UG5
COG3587 (Restriction endonuclease ), Mod (COG2189), GST_N_3 (pfam13417), GST_C_6 (pfam17171), Nterm_IS4 (pfam13006), DDE_Tnp_1 (pfam01609), PRK09579 (multidrug efflux RND transporter permease subunit), RhaT (TIGR00776), PRK15092 (DNA-binding transcriptional repressor LrhA; Provisional), ManC (COG0662)
DDE_Tnp_ISL3 (pfam01610), gram_neg_porins (cd00342), TauE (pfam01925), hslU (TIGR00390), PRK05456 (ATP-dependent protease subunit HslV), dksA (TIGR02420), YejR (COG0523)