myRT

myRT report for GCA_001022035.1_ASM102203v1

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Seq: CP011578.1 Klebsiella pneumoniae strain CAV1392, complete genome (5328319 bp)
Overview 1 RT 1: 183274-187795 bp 2 RT 2: 282914-288332 bp 3 RT 3: 448142-453297 bp 4 RT 4: 1638730-1645213 bp 5 RT 5: 4811901-4818611 bp 6 RT 6: 5266661-5272209 bp Neighborhood of RT #1 [183274, 187797] bssS PRK10597 RVT-GII PRK05451 PRK10598 Neighborhood of RT #2 [282914, 288334] GT9_LPS_heptosyltransferase DinI RVT-GII PRK10276 umuC Neighborhood of RT #3 [448142, 453299] PinE XerC RVT-GII PRK10276 umuC Neighborhood of RT #4 [1638730, 1645215] YccC PRK10016 RVT-GII dacD SbcB Neighborhood of RT #5 [4811901, 4818802] Collar RVT-GII PRK10276 Neighborhood of RT #6 [5266661, 5272235] YbjK int RVT-GII Phage_CI_repr Phage_CI_repr Phage_CI_C Feature: gene Location: 183274-183528 bp Ori: AKK84762.1 Gene: bssS Feature: domain Description: bssS Location: 183277-183526 bp Feature: domain Description: bssS Location: 1 83277-1 83526 bp Feature: gene Location: 183831-184082 bp Ori: AKK84763.1 Feature: domain Description: PRK10597 Location: 183834-184071 bp Feature: domain Description: PRK1 0597 Location: 1 83834-1 84071 bp Feature: gene Location: 184488-185972 bp Ori: AKK84764.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 184890-185580 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 84890-1 85580 bp Feature: gene Location: 186065-187111 bp Ori: AKK84765.1 Feature: domain Description: PRK05451 Location: 186080-187106 bp Feature: domain Description: PRK05451 Location: 1 86080-1 871 06 bp Feature: gene Location: 187237-187797 bp Ori: AKK84766.1 Feature: domain Description: PRK10598 Location: 187240-187795 bp Feature: domain Description: PRK1 0598 Location: 1 87240-1 87795 bp Feature: gene Location: 282914-284053 bp Ori: AKK84866.1 Feature: domain Description: GT9_LPS_heptosyltransferase Location: 283097-283997 bp Feature: domain Description: GT9_LPS_heptosyltransferase Location: 283097-283997 bp Feature: gene Location: 284224-284466 bp Ori: AKK84867.1 Feature: domain Description: DinI Location: 284275-284455 bp Feature: domain Description: DinI Location: 284275-284455 bp Feature: gene Location: 285084-286568 bp Ori: AKK84868.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285486-286176 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 285486-2861 76 bp Feature: gene Location: 286647-287066 bp Ori: AKK84869.1 Feature: domain Description: PRK10276 Location: 286650-287061 bp Feature: domain Description: PRK1 0276 Location: 286650-287061 bp Feature: gene Location: 287069-288334 bp Ori: AKK84870.1 Feature: domain Description: umuC Location: 287072-288332 bp Feature: domain Description: umuC Location: 287072-288332 bp Feature: gene Location: 448142-448651 bp Ori: AKK85038.1 Feature: domain Description: PinE Location: 448190-448643 bp Feature: domain Description: PinE Location: 4481 90-448643 bp Feature: gene Location: 448729-449151 bp Ori: AKK85039.1 Feature: domain Description: XerC Location: 448765-449110 bp Feature: domain Description: XerC Location: 448765-4491 1 0 bp Feature: gene Location: 450049-451533 bp Ori: AKK85040.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450451-451141 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 450451 -451 1 41 bp Feature: gene Location: 451613-452032 bp Ori: AKK89637.1 Feature: domain Description: PRK10276 Location: 451616-452027 bp Feature: domain Description: PRK1 0276 Location: 451 61 6-452027 bp Feature: gene Location: 452034-453299 bp Ori: AKK85041.1 Feature: domain Description: umuC Location: 452037-453297 bp Feature: domain Description: umuC Location: 452037-453297 bp Feature: gene Location: 1638730-1639788 bp Ori: AKK86166.1 Feature: domain Description: YccC Location: 1638736-1639774 bp Feature: domain Description: YccC Location: 1 638736-1 639774 bp Feature: gene Location: 1639887-1640360 bp Ori: AKK86167.1 Feature: domain Description: PRK10016 Location: 1639890-1640349 bp Feature: domain Description: PRK1 001 6 Location: 1 639890-1 640349 bp Feature: gene Location: 1640442-1641926 bp Ori: AKK86168.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1640844-1641534 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1 640844-1 641 534 bp Feature: gene Location: 1642447-1643610 bp Ori: AKK89691.1 Feature: domain Description: dacD Location: 1642450-1643605 bp Feature: domain Description: dacD Location: 1 642450-1 643605 bp Feature: gene Location: 1643791-1645215 bp Ori: AKK86169.1 Gene: sbcB Feature: domain Description: SbcB Location: 1643797-1645213 bp Feature: domain Description: SbcB Location: 1 643797-1 64521 3 bp Feature: gene Location: 4811901-4813070 bp Ori: AKK89149.1 Feature: domain Description: Collar Location: 4812603-4812774 bp Feature: domain Description: Collar Location: 481 2603-481 2774 bp Feature: gene Location: 4813107-4816265 bp Feature: gene Location: 4816684-4818168 bp Ori: AKK89151.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 4817086-4817776 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 481 7086-481 7776 bp Feature: gene Location: 4818246-4818485 bp Feature: gene Location: 4818485-4818802 bp Ori: AKK89153.1 Feature: domain Description: PRK10276 Location: 4818491-4818611 bp Feature: domain Description: PRK1 0276 Location: 481 8491 -481 861 1 bp Feature: gene Location: 5266661-5267224 bp Ori: AKK89552.1 Feature: domain Description: YbjK Location: 5266667-5267204 bp Feature: domain Description: YbjK Location: 5266667-5267204 bp Feature: gene Location: 5267347-5268399 bp Ori: AKK89553.1 Feature: domain Description: int Location: 5267350-5268349 bp Feature: domain Description: int Location: 5267350-5268349 bp Feature: gene Location: 5268818-5270302 bp Ori: AKK89554.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5269220-5269910 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5269220-526991 0 bp Feature: gene Location: 5270401-5271345 bp Feature: gene Location: 5271357-5272235 bp Ori: AKK89556.1 Feature: domain Description: Phage_CI_repr Location: 5271384-5271567 bp Feature: domain Description: Phage_CI_repr Location: 5271 384-5271 567 bp Feature: domain Description: Phage_CI_repr Location: 5271696-5271888 bp Feature: domain Description: Phage_CI_repr Location: 5271 696-5271 888 bp Feature: domain Description: Phage_CI_C Location: 5271915-5272209 bp Feature: domain Description: Phage_CI_C Location: 5271 91 5-5272209 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT bssS (PRK12301), PRK10597 (DNA damage-inducible protein I; Provisional), RVT-GII, PRK05451 (dihydroorotase; Provisional), PRK10598 (lipoprotein; Provisional), GT9_LPS_heptosyltransferase (cd03789), DinI (pfam06183), PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), PinE (COG1961)
XerC (COG4973), YccC (COG1289), PRK10016 (DNA gyrase inhibitor SbmC), dacD (PRK11397), SbcB (COG2925), Collar (pfam07484), YbjK (COG3226), int (PHA02601), Phage_CI_repr (pfam07022), Phage_CI_C (pfam16452)

Seq: CP011576.1 Klebsiella pneumoniae strain CAV1392 plasmid pCAV1392-50, complete sequence (49832 bp)
Overview 1 RT 1: 7970-13061 bp Neighborhood of RT #1 [7970, 13069] Rve RVT-GII PRK10276 umuC Feature: gene Location: 7970-8572 bp Feature: gene Location: 8549-9253 bp Ori: AKK84420.1 Feature: domain Description: Rve Location: 8552-9197 bp Feature: domain Description: Rve Location: 8552 -9197 bp Feature: gene Location: 9474-10958 bp Ori: AKK84421.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9876-10566 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 9876-10566 bp Feature: gene Location: 11367-11798 bp Ori: AKK84422.1 Feature: domain Description: PRK10276 Location: 11418-11781 bp Feature: domain Description: PRK102 76 Location: 11418-11781 bp Feature: gene Location: 11798-13069 bp Ori: AKK84423.1 Feature: domain Description: umuC Location: 11801-13061 bp Feature: domain Description: umuC Location: 11801-13061 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Rve (COG3316), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)

Seq: CP011577.1 Klebsiella pneumoniae strain CAV1392 plasmid pCAV1392-131, complete sequence (130719 bp)
Overview 1 RT 1: 87816-92807 bp Neighborhood of RT #1 [87816, 92812] Antirestrict RVT-GII PRK10276 umuC Feature: gene Location: 87816-88241 bp Ori: AKK84566.1 Feature: domain Description: Antirestrict Location: 87951-88239 bp Feature: domain Description: Antirestrict Location: 87951-8823 9 bp Feature: gene Location: 88762-88992 bp Feature: gene Location: 89226-90710 bp Ori: AKK84568.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89628-90318 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 89628-903 18 bp Feature: gene Location: 91116-91541 bp Ori: AKK84569.1 Feature: domain Description: PRK10276 Location: 91119-91527 bp Feature: domain Description: PRK10276 Location: 91119-91527 bp Feature: gene Location: 91541-92812 bp Ori: AKK84570.1 Feature: domain Description: umuC Location: 91544-92807 bp Feature: domain Description: umuC Location: 91544-92807 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT Antirestrict (pfam03230), RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609)