myRT

myRT report for GCA_001022115.1_ASM102211v1

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Seq: CP011617.1 Klebsiella oxytoca strain CAV1335 plasmid pCAV1335-115, complete sequence (115319 bp)
Overview 1 RT 1: 33559-38565 bp Neighborhood of RT #1 [33559, 38565] INT_Cre_C RVT-GII HHA Feature: gene Location: 33559-33876 bp Feature: gene Location: 33942-35078 bp Ori: AKL20953.1 Feature: domain Description: INT_Cre_C Location: 34365-35019 bp Feature: domain Description: INT_Cre_C Location: 34365-3501 9 bp Feature: gene Location: 35164-36648 bp Ori: AKL20954.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35566-36256 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 35566-36256 bp Feature: gene Location: 37164-37418 bp Ori: AKL20955.1 Feature: domain Description: HHA Location: 37215-37398 bp Feature: domain Description: HHA Location: 3721 5-37398 bp Feature: gene Location: 37504-38565 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT INT_Cre_C (cd00799), RVT-GII, HHA (pfam05321)

Seq: CP011618.1 Klebsiella oxytoca strain CAV1335, complete genome (6229565 bp)
Overview 1 RT 1: 350833-355507 bp 2 RT 2: 910145-914565 bp 3 RT 3: 1245768-1250264 bp 4 RT 4: 2047410-2051391 bp 5 RT 5: 3697832-3704012 bp 6 RT 6: 5126778-5131702 bp 7 RT 7: 5159530-5166600 bp 8 RT 8: 5544217-5559037 bp 9 RT 9: 5791255-5797661 bp 10 RT 10: 5948541-5954624 bp 11 RT 11: 6147508-6155525 bp Neighborhood of RT #1 [350833, 355509] RVT-GII PRK10276 umuC Neighborhood of RT #2 [910145, 914565] umuC PRK10276 RVT-GII Neighborhood of RT #3 [1245768, 1250266] PRK10598 PRK05451 RVT-GII PRK10597 bssS Neighborhood of RT #4 [2047410, 2051391] RVT-GII Neighborhood of RT #5 [3697832, 3704014] phn_DUF6 Acetyltransf_10 RVT-GII PRK08155 PRK08178 Neighborhood of RT #6 [5126778, 5131702] Dcm Dcm RVT-GII PRK10597 Neighborhood of RT #7 [5159530, 5166600] PinE RVT-GII RVT-GII Neighborhood of RT #8 [5544217, 5559039] COG4733 PRK09039 SMC_prok_B CBM_4_9 SMC_prok_B CBM_4_9 CBM_4_9 COG4733 Peptidase_S74 RVT-GII PRK10276 YejM Neighborhood of RT #9 [5791255, 5797675] dacD Caps_assemb_Wzi RVT-GII PRK10016 YccC Neighborhood of RT #10 [5948541, 5954659] Pectate_lyase_3 Beta_helix RVT-GII PRK10276 Neighborhood of RT #11 [6147508, 6155527] PinE RVT-GII RVT-GII PRK10276 umuC Feature: gene Location: 350833-351066 bp Feature: gene Location: 351098-351358 bp Feature: gene Location: 352254-353738 bp Ori: AKL21337.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352656-353346 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 352 656-353346 bp Feature: gene Location: 353820-354239 bp Ori: AKL21338.1 Feature: domain Description: PRK10276 Location: 353823-354234 bp Feature: domain Description: PRK102 76 Location: 35382 3-3542 34 bp Feature: gene Location: 354241-355509 bp Ori: AKL21339.1 Feature: domain Description: umuC Location: 354244-355507 bp Feature: domain Description: umuC Location: 3542 44-355507 bp Feature: gene Location: 910145-911410 bp Ori: AKL21825.1 Feature: domain Description: umuC Location: 910148-911405 bp Feature: domain Description: umuC Location: 910148-911405 bp Feature: gene Location: 911410-911832 bp Ori: AKL21826.1 Feature: domain Description: PRK10276 Location: 911413-911824 bp Feature: domain Description: PRK102 76 Location: 911413-91182 4 bp Feature: gene Location: 911911-913395 bp Ori: AKL21827.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912313-913003 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 912 313-913003 bp Feature: gene Location: 914025-914219 bp Feature: gene Location: 914374-914565 bp Feature: gene Location: 1245768-1246328 bp Ori: AKL22122.1 Feature: domain Description: PRK10598 Location: 1245771-1246326 bp Feature: domain Description: PRK10598 Location: 12 45771-12 4632 6 bp Feature: gene Location: 1246452-1247498 bp Ori: AKL22123.1 Feature: domain Description: PRK05451 Location: 1246467-1247493 bp Feature: domain Description: PRK05451 Location: 12 46467-12 47493 bp Feature: gene Location: 1247591-1249075 bp Ori: AKL22124.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 1247993-1248683 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 12 47993-12 48683 bp Feature: gene Location: 1249480-1249725 bp Ori: AKL22125.1 Feature: domain Description: PRK10597 Location: 1249483-1249720 bp Feature: domain Description: PRK10597 Location: 12 49483-12 4972 0 bp Feature: gene Location: 1250012-1250266 bp Ori: AKL22126.1 Gene: bssS Feature: domain Description: bssS Location: 1250015-1250264 bp Feature: domain Description: bssS Location: 12 50015-12 502 64 bp Feature: gene Location: 2047410-2047736 bp Feature: gene Location: 2047736-2047975 bp Feature: gene Location: 2048054-2049538 bp Ori: AKL22794.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2048456-2049146 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 2 048456-2 049146 bp Feature: gene Location: 2049991-2051391 bp Feature: gene Location: 3697832-3698665 bp Ori: AKL24193.1 Feature: domain Description: phn_DUF6 Location: 3697859-3698651 bp Feature: domain Description: phn_DUF6 Location: 3697859-3698651 bp Feature: gene Location: 3698736-3699182 bp Ori: AKL24194.1 Feature: domain Description: Acetyltransf_10 Location: 3698844-3699153 bp Feature: domain Description: Acetyltransf_10 Location: 3698844-3699153 bp Feature: gene Location: 3699988-3701472 bp Ori: AKL24195.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700390-3701080 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 3700390-3701080 bp Feature: gene Location: 3702032-3703720 bp Ori: AKL24196.1 Feature: domain Description: PRK08155 Location: 3702035-3703718 bp Feature: domain Description: PRK08155 Location: 3702 035-3703718 bp Feature: gene Location: 3703724-3704014 bp Ori: AKL24197.1 Feature: domain Description: PRK08178 Location: 3703727-3704012 bp Feature: domain Description: PRK08178 Location: 370372 7-3704012 bp Feature: gene Location: 5126778-5127035 bp Feature: gene Location: 5127032-5129113 bp Ori: AKL25487.1 Feature: domain Description: Dcm Location: 5127053-5128028 bp Feature: domain Description: Dcm Location: 512 7053-512 802 8 bp Feature: domain Description: Dcm Location: 5128898-5129072 bp Feature: domain Description: Dcm Location: 512 8898-512 9072 bp Feature: gene Location: 5129606-5131090 bp Ori: AKL25488.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5130008-5130698 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5130008-5130698 bp Feature: gene Location: 5131169-5131402 bp Ori: AKL25489.1 Feature: domain Description: PRK10597 Location: 5131172-5131397 bp Feature: domain Description: PRK10597 Location: 5131172 -5131397 bp Feature: gene Location: 5131481-5131702 bp Feature: gene Location: 5159530-5159787 bp Feature: gene Location: 5161558-5162136 bp Ori: AKL25519.1 Feature: domain Description: PinE Location: 5161561-5162104 bp Feature: domain Description: PinE Location: 5161561-5162 104 bp Feature: gene Location: 5162570-5164054 bp Ori: AKL25520.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5162972-5163662 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5162 972 -5163662 bp Feature: gene Location: 5164479-5165963 bp Ori: AKL25521.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5164881-5165571 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5164881-5165571 bp Feature: gene Location: 5166041-5166280 bp Feature: gene Location: 5166280-5166600 bp Feature: gene Location: 5544217-5553429 bp Ori: AKL25848.1 Feature: domain Description: COG4733 Location: 5544241-5547100 bp Feature: domain Description: COG4733 Location: 55442 41-5547100 bp Feature: domain Description: PRK09039 Location: 5547877-5548072 bp Feature: domain Description: PRK09039 Location: 5547877-5548072 bp Feature: domain Description: SMC_prok_B Location: 5549176-5549788 bp Feature: domain Description: SMC_prok_B Location: 5549176-5549788 bp Feature: domain Description: CBM_4_9 Location: 5549989-5550205 bp Feature: domain Description: CBM_4_9 Location: 5549989-55502 05 bp Feature: domain Description: SMC_prok_B Location: 5550292-5550520 bp Feature: domain Description: SMC_prok_B Location: 55502 92 -555052 0 bp Feature: domain Description: CBM_4_9 Location: 5550574-5550949 bp Feature: domain Description: CBM_4_9 Location: 5550574-5550949 bp Feature: domain Description: CBM_4_9 Location: 5551174-5551579 bp Feature: domain Description: CBM_4_9 Location: 5551174-5551579 bp Feature: domain Description: COG4733 Location: 5552512-5553097 bp Feature: domain Description: COG4733 Location: 5552 512 -5553097 bp Feature: gene Location: 5553470-5554612 bp Ori: AKL25849.1 Feature: domain Description: Peptidase_S74 Location: 5554286-5554439 bp Feature: domain Description: Peptidase_S74 Location: 55542 86-5554439 bp Feature: gene Location: 5555048-5556532 bp Ori: AKL25850.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5555450-5556140 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5555450-5556140 bp Feature: gene Location: 5556639-5557022 bp Ori: AKL25851.1 Feature: domain Description: PRK10276 Location: 5556645-5556987 bp Feature: domain Description: PRK102 76 Location: 5556645-5556987 bp Feature: gene Location: 5557279-5559039 bp Ori: AKL25852.1 Feature: domain Description: YejM Location: 5557282-5559037 bp Feature: domain Description: YejM Location: 55572 82 -5559037 bp Feature: gene Location: 5791255-5792421 bp Ori: AKL26675.1 Feature: domain Description: dacD Location: 5791258-5792416 bp Feature: domain Description: dacD Location: 57912 58-5792 416 bp Feature: gene Location: 5792575-5794011 bp Ori: AKL26028.1 Feature: domain Description: Caps_assemb_Wzi Location: 5792845-5793970 bp Feature: domain Description: Caps_assemb_Wzi Location: 5792 845-5793970 bp Feature: gene Location: 5794481-5795965 bp Ori: AKL26029.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5794883-5795573 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5794883-5795573 bp Feature: gene Location: 5796047-5796520 bp Ori: AKL26030.1 Feature: domain Description: PRK10016 Location: 5796050-5796509 bp Feature: domain Description: PRK10016 Location: 5796050-5796509 bp Feature: gene Location: 5796617-5797675 bp Ori: AKL26031.1 Feature: domain Description: YccC Location: 5796623-5797661 bp Feature: domain Description: YccC Location: 579662 3-5797661 bp Feature: gene Location: 5948541-5950673 bp Ori: AKL26169.1 Feature: domain Description: Pectate_lyase_3 Location: 5949354-5949834 bp Feature: domain Description: Pectate_lyase_3 Location: 5949354-5949834 bp Feature: domain Description: Beta_helix Location: 5950083-5950506 bp Feature: domain Description: Beta_helix Location: 5950083-5950506 bp Feature: gene Location: 5950676-5952076 bp Feature: gene Location: 5952529-5954013 bp Ori: AKL26171.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5952931-5953621 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 5952 931-595362 1 bp Feature: gene Location: 5954091-5954330 bp Feature: gene Location: 5954330-5954659 bp Ori: AKL26173.1 Feature: domain Description: PRK10276 Location: 5954342-5954624 bp Feature: domain Description: PRK102 76 Location: 5954342 -595462 4 bp Feature: gene Location: 6147508-6149280 bp Feature: gene Location: 6149356-6149934 bp Ori: AKL26370.1 Feature: domain Description: PinE Location: 6149359-6149902 bp Feature: domain Description: PinE Location: 6149359-6149902 bp Feature: gene Location: 6150368-6151852 bp Ori: AKL26371.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6150770-6151460 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6150770-6151460 bp Feature: gene Location: 6152277-6153761 bp Ori: AKL26372.1 Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6152679-6153369 bp Feature: RT Description: RVT-GII Note: GII (Group II introns RT) Location: 6152 679-6153369 bp Feature: gene Location: 6153841-6154260 bp Ori: AKL26696.1 Feature: domain Description: PRK10276 Location: 6153844-6154255 bp Feature: domain Description: PRK102 76 Location: 6153844-61542 55 bp Feature: gene Location: 6154262-6155527 bp Ori: AKL26373.1 Feature: domain Description: umuC Location: 6154265-6155525 bp Feature: domain Description: umuC Location: 61542 65-615552 5 bp Sorry, your browser does not support inline SVG.
Associated domains:myRT RVT-GII, PRK10276 (translesion error-prone DNA polymerase V autoproteolytic subunit), umuC (PRK03609), PRK10598 (lipoprotein; Provisional), PRK05451 (dihydroorotase; Provisional), PRK10597 (DNA damage-inducible protein I; Provisional), bssS (PRK12301), phn_DUF6 (TIGR03340), Acetyltransf_10 (pfam13673), PRK08155 (acetolactate synthase large subunit)
PRK08178 (acetolactate synthase 1 small subunit), Dcm (COG0270), PinE (COG1961), COG4733 (Phage-related protein, tail component ), PRK09039 (peptidoglycan -binding protein), SMC_prok_B (TIGR02168), CBM_4_9 (pfam02018), Peptidase_S74 (pfam13884), YejM (COG3083), dacD (PRK11397)
Caps_assemb_Wzi (pfam14052), PRK10016 (DNA gyrase inhibitor SbmC), YccC (COG1289), Pectate_lyase_3 (pfam12708), Beta_helix (pfam13229)